Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7198g00001 ATGGTCCTTACAAAGATGCGTGAGATTGCAGAGAAATATTTGGAGTCACCAGTTAAAAATGCAGTTGTTACGGTGCCTGCTTATTTCAATGATTCTCAACGAAAAGCCACTATTGATGCTGGTGCCATTGCTGGCCTTAATGTTATACGGATAATCAATGAACCAACAGCTGCTGCTCTTGCATATGGTCTTGATAAGAGAAGTAACTGTGTTGAAGAAAACAATATTTTTGTCTTTGATCTCGGTGGTGGCACTTTTGATGTTTCTATCCTAACAATCAAGGATAGGATATTTCAAGTTAAGGCCACTGGTGGAAACACTCACCTCGGAGGAGAGGACTTTGATAACAGAATGGTGAACTACTTTGTGCAGGAATTCAAGAGGAAGAGCAAATTGGATGTTACCGGGAACTCACGAGCCTTGAGAAGGTTGAGAACTGCATGTGAAAGGGCTAAAAGGGCACTCTCTTTTTCTGTTGTCTCCACTATTGAGGTAGACTCTTTATTCCAGGGAATTGACTTCTTTTCAACAATCACTCGTGCTAAGTTTGAGGAAATCAATATGGACATCTTTAAGGAGTGTATGGAGACCGTAGAGAGCTGTCTTACTGATGCTAACATGAACAGGAATACTTTAAATGATGTCGTACTTGTTGGTGGGTCTTCTAGGATTCCCAAAGTGCAACAACTATTGCAGGAATTTTTCGACGGAAAGGATTTGTGCACGAGCATCAATCCTGACGAGGCTGTTGCGTATGGAGCAGCTGTACAAGCTGCTTTGTTGAGTGAAGGCTTTAAAAATGTTCCAAACTTGGTGCTTCGTGATGTTACACCGTTATCTCTTGGTAAGTCAAATGTAGGAGATATTATGAGTGTGGTGATTCCTAGGAACACTTGTTTTCCCATCAAGAGGACAAACAGATATTATACAGTTGAAGATAACCAATCCCAAGTCTTGATTGAGGTTTATGAGGGTGAGAGAACAAGAGCCAGTGACAACAATTTGTTAGGCTCCTTTACTCTTTTCGGTTTTCCCCCCGCTCCTCGTGGGCATCCGGTTGATGTTTGTTTTGCTATAGATGAAAACAGTATTTTGACTGTTTCTGCTACGGAAAGTTCTACCGGCAATATGAATGAGATTACCATAACAAATTACAAAGAAAGGTTGCCAACTGAAGAAATTGAAAAAATGATTCAAGAAGCTAAGAACTACCATGTAGAAGATAAGAAATTCCTAAAGAAGGCTGAAGTATTGAATGCTTTAGATTATTGCGTTTACAAGATAAGGAATTCTCTAAAGCAAACAGATGTTAATTCAAAGCTTTTGTCTCAAGATAATGACAGGATCAATTCTGCAATCACAATAGCCTCAAACTTTCTTGATAGTAACAAGGAGGTTGAAATTGATGTTCTTGAGGGTCATCTGAAAGAGCTTGAGAGCATGTTTGAATCCATTATTATAGCCTAA 1467 0.3947 MVLTKMREIAEKYLESPVKNAVVTVPAYFNDSQRKATIDAGAIAGLNVIRIINEPTAAALAYGLDKRSNCVEENNIFVFDLGGGTFDVSILTIKDRIFQVKATGGNTHLGGEDFDNRMVNYFVQEFKRKSKLDVTGNSRALRRLRTACERAKRALSFSVVSTIEVDSLFQGIDFFSTITRAKFEEINMDIFKECMETVESCLTDANMNRNTLNDVVLVGGSSRIPKVQQLLQEFFDGKDLCTSINPDEAVAYGAAVQAALLSEGFKNVPNLVLRDVTPLSLGKSNVGDIMSVVIPRNTCFPIKRTNRYYTVEDNQSQVLIEVYEGERTRASDNNLLGSFTLFGFPPAPRGHPVDVCFAIDENSILTVSATESSTGNMNEITITNYKERLPTEEIEKMIQEAKNYHVEDKKFLKKAEVLNALDYCVYKIRNSLKQTDVNSKLLSQDNDRINSAITIASNFLDSNKEVEIDVLEGHLKELESMFESIIIA 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7198g00001 488 PANTHER HEAT SHOCK PROTEIN 70KDA 1 445 IPR013126 GO:0005524|GO:0140662
Trme7198g00001 488 Pfam Hsp70 protein 1 485 IPR013126 GO:0005524|GO:0140662
Trme7198g00001 488 SUPERFAMILY Actin-like ATPase domain 1 66 IPR043129 -
Trme7198g00001 488 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 267 422 IPR029047 -
Trme7198g00001 488 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 416 486 IPR029048 -
Trme7198g00001 488 Gene3D - 157 246 - -
Trme7198g00001 488 PRINTS 70kDa heat shock protein signature 212 228 - -
Trme7198g00001 488 PRINTS 70kDa heat shock protein signature 244 264 - -
Trme7198g00001 488 PRINTS 70kDa heat shock protein signature 84 94 - -
Trme7198g00001 488 PRINTS 70kDa heat shock protein signature 350 366 - -
Trme7198g00001 488 PRINTS 70kDa heat shock protein signature 21 41 - -
Trme7198g00001 488 PRINTS 70kDa heat shock protein signature 270 289 - -
Trme7198g00001 488 ProSitePatterns Heat shock hsp70 proteins family signature 3. 215 229 IPR018181 -
Trme7198g00001 488 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 266 417 IPR029047 -
Trme7198g00001 488 Gene3D - 418 488 IPR029048 -
Trme7198g00001 488 SUPERFAMILY Actin-like ATPase domain 73 261 IPR043129 -
Trme7198g00001 488 FunFam Heat shock 70 kDa protein 264 418 - -
Trme7198g00001 488 ProSitePatterns Heat shock hsp70 proteins family signature 2. 78 91 IPR018181 -
Trme7198g00001 488 Gene3D - 77 156 - -
Trme7198g00001 488 Gene3D - 1 76 - -
Trme7198g00001 488 FunFam Heat shock 70 kDa 110 193 - -
Trme7198g00001 488 FunFam Endoplasmic reticulum chaperone BiP 1 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7198g00001 Trme-Chr7198 53 1519 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7198g00001 1 486 Calmodulin-binding Proteins AT3G12580 64.959 0.0 649