Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme71966g00001 GTTTCCCATTATGCAAAGGAATTGGAGGAGATGAAAGATGTAGGAAACCAAGAATTTGTTGCTTCACTGCGAAGGAAAAGCAGTGGTTTTGCTAGGGGTGCTTCCATGTACCGGGGTGTTACAAGGCACCATCAACAGAGTAAATGGCAAGCACGAATTGGTCGAGTTGCTGGAAACAAAGATCTATACTTGGGAACATTTGGTAAACTTTCACCTTCTGTTATTAACTTGCTATTTTATACAATATGA 249 0.4056 VSHYAKELEEMKDVGNQEFVASLRRKSSGFARGASMYRGVTRHHQQSKWQARIGRVAGNKDLYLGTFGKLSPSVINLLFYTI 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme71966g00001 82 Gene3D AP2/ERF domain 36 71 IPR036955 GO:0003700|GO:0006355
Trme71966g00001 82 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 68 - -
Trme71966g00001 82 SUPERFAMILY DNA-binding domain 35 69 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme71966g00001 Trme-Chr71966 115 531 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme71966g00001 1 67 AP2-EREBP Transcription Factor Family AT5G65510 82.090 2.27e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trme71966g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme71966g00001 K09285 - pvy:116146373 124.405