Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme719615g00001 ATGCCTTCGGGTTTTATTGGATCTAATCTTGTCTACGACTACATGAATCCGGCGGCGGGAGAGACACTTTCTGGTGGACAGGTAATGAATTCAACTCTTCCAGATAGACCTGATCAACCGGACTGTAAATACTTTATGAGCACCGGAACATGCAAATATGGTTCTGATTGCAAGTTCCATCACCCTAAAGAAAG 194 0.4381 MPSGFIGSNLVYDYMNPAAGETLSGGQVMNSTLPDRPDQPDCKYFMSTGTCKYGSDCKFHHPKE 64
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme719615g00001 64 ProSiteProfiles Zinc finger C3H1-type profile. 36 64 IPR000571 GO:0046872
Trme719615g00001 64 PANTHER PROTEIN PHOSPHATASE RELATED 27 63 - -
Trme719615g00001 64 SMART c3hfinal6 36 63 IPR000571 GO:0046872
Trme719615g00001 64 Gene3D - 24 64 - -
Trme719615g00001 64 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 38 63 IPR000571 GO:0046872
Trme719615g00001 64 SUPERFAMILY CCCH zinc finger 40 63 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme719615g00001 Trme-Chr719615 1 194 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme719615g00001 6 64 C2H2 Transcription Factor Family AT5G18550 42.424 5.13e-13 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trme719615g00001 zf-CCCH 5.6e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme719615g00001 - - vvo:131616025 125.176