Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme71871g00001 ATGTCGAATTTTCAAAGCAAGGAAATCTTCAAAGAGTGTCGTAAAAATCACGCTTCAAGCATTGGGGGCTATGCTCTTGATGGTTGTTGCGAGTTTTTACCTGCAGGAGTTGAAGGTACTATTGATTTTTTCAAATGTGCGGCTTGTTATTGTCATAAAAATTTTCACCGCAAAGAAACTGTTGCTAGAGAACCGACTCATTTTCTATCCAAAATCACCTACAGTCCTCAGCCAACTCCCATCTCGACGGTCTTTCARACTCCRAATGGTTACCGCCATGTGACTGGACCATCCAGGGGGACCACAACTGCACCTGCTTTTCCTTCTGTTGTTATCCATGATGGGGCTCACTTTCATCTTACCGATCAAATCAATGGTGGTGGTACTAGTGGTGGCGGAGAAGGCTCATCGAGCTCTAAGAAAAGGTTTAGAACTAAATTTAGTCATGAACAAAAGGAGAAGATGTTGGATTTTGCTGTGAAAATAGGTTGGAGGATTAAGAAACAAGATCAAAATGCTGTTGAGATTTTTTGCAACAAGATTGGGGTCAAGTTTCAAGTGTTTAAG 567 0.4127 MSNFQSKEIFKECRKNHASSIGGYALDGCCEFLPAGVEGTIDFFKCAACYCHKNFHRKETVAREPTHFLSKITYSPQPTPISTVFQTPNGYRHVTGPSRGTTTAPAFPSVVIHDGAHFHLTDQINGGGTSGGGEGSSSSKKRFRTKFSHEQKEKMLDFAVKIGWRIKKQDQNAVEIFCNKIGVKFQVFK 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme71871g00001 189 NCBIfam homeobox domain, ZF-HD class 140 189 IPR006455 -
Trme71871g00001 189 MobiDBLite consensus disorder prediction 124 138 - -
Trme71871g00001 189 Pfam ZF-HD protein dimerisation region 9 60 IPR006456 -
Trme71871g00001 189 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 10 59 IPR006456 -
Trme71871g00001 189 MobiDBLite consensus disorder prediction 124 144 - -
Trme71871g00001 189 Gene3D - 126 189 - -
Trme71871g00001 189 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 10 59 IPR006456 -
Trme71871g00001 189 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 10 189 - -
Trme71871g00001 189 SUPERFAMILY Homeodomain-like 127 189 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme71871g00001 Trme-Chr71871 175 741 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme71871g00001 10 189 ZF-HD Transcription Factor Family AT4G24660 44.624 2.17e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Trme71871g00001 ZF-HD_dimer 3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme71871g00001 - - tpra:123892177 342.813