Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme71653g00001 GCTAGTCAACAACCGCGGGAGAAGCTAGAATTCAAGCATAGACTCTCAATAGCTCAAGGTGCAGCTAAAGGTTTGGCTCATCTTCATTCTTTGAGTCCCCGTTTGGTGCATAAGAATTTCAAAACATCTAATGTTCTTGTTGATGAAAACTTCATTTCTAAGGTCGCGGATGCAGGGCTTCGTAATTTTCTAGGGAGAGTTGACATTGCAGGCTCATCTTCTCAAGTGGCATCAGACGAGATATTCCTTGCACCTGAGTAA 261 0.433 ASQQPREKLEFKHRLSIAQGAAKGLAHLHSLSPRLVHKNFKTSNVLVDENFISKVADAGLRNFLGRVDIAGSSSQVASDEIFLAPE 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme71653g00001 86 ProSiteProfiles Protein kinase domain profile. 1 86 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme71653g00001 86 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 5 86 IPR047117 -
Trme71653g00001 86 Pfam Protein tyrosine and serine/threonine kinase 5 85 IPR001245 GO:0004672|GO:0006468
Trme71653g00001 86 SUPERFAMILY Protein kinase-like (PK-like) 7 86 IPR011009 -
Trme71653g00001 86 Gene3D Transferase(Phosphotransferase) domain 1 2 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme71653g00001 Trme-Chr71653 168 636 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme71653g00001 9 86 Receptor kinase-like Gene Family AT1G79620 41.772 1.43e-15 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Trme71653g00001 PK_Tyr_Ser-Thr 1.2e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme71653g00001 - - tpra:123888647 167.548