Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme712806g00001 ATGGTGAAGCACCAGGCTCGAGATCCACAGGTTAAGGAGACGAAGGCATTGGAACCCAAAGTTGTGGAAGAGGAAATGGAGGAGGATGACGAGAATATTTTATGCAATGTATGTTTCATGCATTATGGCGTGGACTCTTTCTGGATTTTCTGCGACTATTGTGATCATTGGTATCATGGGAAGTGTGTGAAGGTTACGCCTTCCATTGCTGCGGAAATAAAT 222 0.4414 MVKHQARDPQVKETKALEPKVVEEEMEEDDENILCNVCFMHYGVDSFWIFCDYCDHWYHGKCVKVTPSIAAEIN 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme712806g00001 74 PANTHER CPG BINDING PROTEIN 10 73 IPR045104 GO:0006355|GO:0042393
Trme712806g00001 74 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 74 IPR013083 -
Trme712806g00001 74 SUPERFAMILY FYVE/PHD zinc finger 26 71 IPR011011 -
Trme712806g00001 74 Pfam PHD-finger 35 68 IPR019787 -
Trme712806g00001 74 MobiDBLite consensus disorder prediction 1 22 - -
Trme712806g00001 74 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme712806g00001 Trme-Chr712806 1 222 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme712806g00001 32 73 Alfin-like Transcription Factor Family AT3G11200 54.762 7.44e-13 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trme712806g00001 PHD 2.2e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme712806g00001 K26274 - gmx:100170700 78.5666