Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trme712806g00001 | ATGGTGAAGCACCAGGCTCGAGATCCACAGGTTAAGGAGACGAAGGCATTGGAACCCAAAGTTGTGGAAGAGGAAATGGAGGAGGATGACGAGAATATTTTATGCAATGTATGTTTCATGCATTATGGCGTGGACTCTTTCTGGATTTTCTGCGACTATTGTGATCATTGGTATCATGGGAAGTGTGTGAAGGTTACGCCTTCCATTGCTGCGGAAATAAAT | 222 | 0.4414 | MVKHQARDPQVKETKALEPKVVEEEMEEDDENILCNVCFMHYGVDSFWIFCDYCDHWYHGKCVKVTPSIAAEIN | 74 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trme712806g00001 | 74 | PANTHER | CPG BINDING PROTEIN | 10 | 73 | IPR045104 | GO:0006355|GO:0042393 | |
Trme712806g00001 | 74 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 24 | 74 | IPR013083 | - | |
Trme712806g00001 | 74 | SUPERFAMILY | FYVE/PHD zinc finger | 26 | 71 | IPR011011 | - | |
Trme712806g00001 | 74 | Pfam | PHD-finger | 35 | 68 | IPR019787 | - | |
Trme712806g00001 | 74 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Trme712806g00001 | 74 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trme712806g00001 | Trme-Chr712806 | 1 | 222 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trme712806g00001 | 32 | 73 | Alfin-like Transcription Factor Family | AT3G11200 | 54.762 | 7.44e-13 | 58.9 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | PHD | Trme712806g00001 | PHD | 2.2e-07 | CL0390 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trme712806g00001 | K26274 | - | gmx:100170700 | 78.5666 |