Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7113g00001 GAAGATCCCAACCAAAATGGAGAGGATGATTGGCTTGAGACAGAGAAGAAAGTTATCATTATCCATCGGCTTCATCAGATTCTTGAGCCTTTCATGCTCAGGCGTCGTGTTGAAGAGGTTGAAGGCTCGCTACCTCCAAAGGTATCCATAGTTTTACGATGTAGAATGTCAGCCTTCCAGAGTGCCATTTATGACTGGATTAAATCAACTGGAACCCTTCGTCTTAATCCTGAGGATGAGAAACGTCGGATGGAGAAAAGTCCGCTCTACCAGGCAAAGCAGTATAAAACTTTAAATAACAGATGCATGGAGCTACGTAAAACTTGCAATCATCCATTGCTTAATTACCCATTCTTTAGTGACTTATCTAAAGATTTTATGGTAAAATGTTGTGGGAAATTATGGATGCTGGATAGGATTCTCATAAAACTTCAAAGAACTGGACATCGAGTTCTGCTGTTCAGTACCATGACAAAACTCCTAGACATATTGGAAGAGTACCTGCAATGGCGAAGACTTGTATACAGAAGAATTGATGGTACAACAGCTTTAGAAGATCGTGAATCAGCTATAGTGGACTTCAATAGCCCTAATTCGGACTGTTTCATCTTCTTGCTTAGTATTCGGGCTGCTGGGAGAGGCCTTAACCTTCAGTCTGCTGATACAGTTGTCATTTATGATCCTGACCCGAACCCTAAAAATGAGGAGCAGGCTGTGGCCAGAGCTCATCGCATTGGACAAAAAAGAGAAGTCAAAGTTATCTACATGGAAGCTGTTGTTGACAAAATCTCTAGCCATCAGAAGGAGGATGAACTGAGAAATAGAGGTACTGTTGATATGGAGGACGAGCTTGCAGGTAAGGATCGTTATGTAGGATCCATTGAGAGTCTCATAAGGAGTAATATTCAACAATATAAGATAGATATGGCTGATGAGGTTATTAATGCTGGACGTTTTGATCAAAGGACAACACATGAAGAGAGACGTTTGACTTTGGAGACATTATTGCACGATGAAGAAAGGTCTCAAGAAACTGTACATGATGTTCCTTCATTGGAGGAGATAAATCGCATGATTGCTAGGAATGAAGAAGAAGTTGAATTGTTTGATCAAATGGATGAAGAAGAGGATTGGCTTGAGGAGATGACTCAGTATGATCAGGTGCCTAAGTGGCTTCGAGCCAGTACAAGAGAAGTGAATGCTGCTATTGCTGCTTCGTCAAAAAGACCATCAAAGAAGAACGCTTTATCGGGTGGTAATGTTGGCTTGGAATCCAATGAAGTGGGTTCTGAAAGGAGAAGGGGGGGACCAAATGGAAAAAATCCTAATTATAAAGAGTTGGAAGATGAAATTGGAGAATCTTCTGAAGAAATCTCTGAAGACAAAAATGAAGATTCTGCACATGATGAAGGGGAGATTGGAGAGTTTGAAGATGATGGGTGTAGTGGGGCTGATGTAGCTCAACACATGGATAAATATAAGTTGGAAGATGTTACTCCTTCTGATGCTGAATATGAATTTCCCCGGTCTTTAGGAGGTGCTGGAAGTAATCATGTGGTTGAAGAAGGTGGTTCTTCAGCATCATCTGCAGACGGTCAATTTATATTTCCTGTTACACAAAGATTGACACAAACAGTGTCGCCATCAGTTTCTTCTCGGAAATTTGGTTCCCTGTCTGCGCTGGATGCCAAGCCAAGATCGGTCTCAAAAAGGA 1714 0.4142 EDPNQNGEDDWLETEKKVIIIHRLHQILEPFMLRRRVEEVEGSLPPKVSIVLRCRMSAFQSAIYDWIKSTGTLRLNPEDEKRRMEKSPLYQAKQYKTLNNRCMELRKTCNHPLLNYPFFSDLSKDFMVKCCGKLWMLDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTALEDRESAIVDFNSPNSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRNRGTVDMEDELAGKDRYVGSIESLIRSNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERSQETVHDVPSLEEINRMIARNEEEVELFDQMDEEEDWLEEMTQYDQVPKWLRASTREVNAAIAASSKRPSKKNALSGGNVGLESNEVGSERRRGGPNGKNPNYKELEDEIGESSEEISEDKNEDSAHDEGEIGEFEDDGCSGADVAQHMDKYKLEDVTPSDAEYEFPRSLGGAGSNHVVEEGGSSASSADGQFIFPVTQRLTQTVSPSVSSRKFGSLSALDAKPRSVSKR 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7113g00001 571 MobiDBLite consensus disorder prediction 546 571 - -
Trme7113g00001 571 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 136 313 IPR001650 -
Trme7113g00001 571 Gene3D - 15 44 IPR038718 -
Trme7113g00001 571 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 376 IPR027417 -
Trme7113g00001 571 MobiDBLite consensus disorder prediction 403 531 - -
Trme7113g00001 571 CDD SF2_C_SNF 131 256 - -
Trme7113g00001 571 Pfam Helicase conserved C-terminal domain 136 246 IPR001650 -
Trme7113g00001 571 MobiDBLite consensus disorder prediction 482 503 - -
Trme7113g00001 571 Gene3D - 45 255 IPR027417 -
Trme7113g00001 571 Coils Coil 444 464 - -
Trme7113g00001 571 FunFam ATP-dependent helicase BRM 45 255 - -
Trme7113g00001 571 Pfam SNF2-related domain 19 112 IPR000330 GO:0005524|GO:0140658
Trme7113g00001 571 Coils Coil 352 372 - -
Trme7113g00001 571 PANTHER SNF2/RAD54 HELICASE FAMILY 4 466 - -
Trme7113g00001 571 MobiDBLite consensus disorder prediction 410 424 - -
Trme7113g00001 571 SMART helicmild6 162 246 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7113g00001 Trme-Chr7113 137 1919 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7113g00001 148 269 RAD5 or RAD16-like Gene Family AT1G11100 39.200 1.08e-19 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme7113g00001 Helicase_C 1.2e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7113g00001 K11647 - gmx:100793092 877.856