Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme71100g00001 ATGAAAGTGAAGAAAGGATGGCTTGCAGTTCAAGTGGGTTTAGAGGAAGAAGAAGAAGGTGGTTCTGCATCTCAAAAATTCGTCATACCTATCTCTTATCTTTACCATCCACTTTTCAAGAATCTTCTTGACCAAGCTTATGATGTTTATGGTTACCACACTAATGGTCCTCTCAAACTTCCTTGTTCTGTTGATGATTTCCTTCATCTTCGTTGGCGAATCGAGAAAGAATCAGGTCCTAATCAACATAACCATAACCATCATCAGCATCGTCTTCCTCATGCTCTGATTTTTCACTCTTGTTGA 306 0.3922 MKVKKGWLAVQVGLEEEEEGGSASQKFVIPISYLYHPLFKNLLDQAYDVYGYHTNGPLKLPCSVDDFLHLRWRIEKESGPNQHNHNHHQHRLPHALIFHSC 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme71100g00001 101 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 3 70 IPR003676 GO:0009733
Trme71100g00001 101 Pfam Auxin responsive protein 3 73 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme71100g00001 Trme-Chr71100 238 543 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme71100g00001 3 75 Calmodulin-binding Proteins AT3G43120 42.466 6.16e-12 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme71100g00001 K14488 - mtr:25489869 182.57