Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme71010g00001 ATGTTAAGTCGTTTGCATCATCGTAATCTAGTGAAACTTATTGGAATATGCATTGAAGGGCGCAAGCGTTGCCTGGTATATGAGCTAGTTCCTAATGGCAGCGTGGAGTCACATCTGCATGGTGATGACAAGAATAGGGGACCTCTAGATTGGGAAGCACGAATGAAAATTGCCCTGGGAGCTGCGAGAGGATTGGCCTATCTTCACGAGGATTCTAATCCCCGTGTAATTCATCGGGACTTCAAAGCCAGCAATGTGCTATTAGAAGACGACTTTACCCCTAAAGTTTCTGATTTTGGTTTGGCAAGAGAAGCAACTGAAGGAAGTAATCATATTTCTACACGGGTGATGGGGACTTTCGG 362 0.4503 MLSRLHHRNLVKLIGICIEGRKRCLVYELVPNGSVESHLHGDDKNRGPLDWEARMKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEDDFTPKVSDFGLAREATEGSNHISTRVMGTFG 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme71010g00001 121 FunFam Protein kinase superfamily protein 30 104 - -
Trme71010g00001 121 PANTHER OS01G0750732 PROTEIN 1 121 - -
Trme71010g00001 121 SUPERFAMILY Protein kinase-like (PK-like) 2 120 IPR011009 -
Trme71010g00001 121 Pfam Protein tyrosine and serine/threonine kinase 1 112 IPR001245 GO:0004672|GO:0006468
Trme71010g00001 121 ProSitePatterns Serine/Threonine protein kinases active-site signature. 76 88 IPR008271 GO:0004672|GO:0006468
Trme71010g00001 121 SMART tyrkin_6 1 120 IPR020635 GO:0004713|GO:0006468
Trme71010g00001 121 Gene3D Transferase(Phosphotransferase) domain 1 1 121 - -
Trme71010g00001 121 ProSiteProfiles Protein kinase domain profile. 1 121 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme71010g00001 Trme-Chr71010 213 669 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme71010g00001 1 121 Receptor kinase-like Gene Family AT5G56890 82.114 8.31e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Trme71010g00001 PK_Tyr_Ser-Thr 1.1e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme71010g00001 - - cit:102606961 238.424