Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme71008g00001 ATGAGATTGATCAACACCTTTTATGCTTTGTCATTTTTTTTCTTGTCTATCATTCTTCTTCCTTCTCCCACTCCGACATTTAGTTGCGATGAGTCCAAATGGAATTCTTGGCTCATTTCAACGTATAATGTAACCCTCATTTTAACGGTGGATTCAAATGGTTGTGGAAATTTTACCGGAGTACAAGATGCCATAGACGCTGTTCCTGACTCCAACTCTAATGCCACTCTTATCATACTCAATTCCGGGACATACAGGGAGAAGGTAAAGGTCAATGCCACCAAGATAAACTTGGTAATGCAGGGTCAAGGATATCTCAACACTTTCATAGAGTGGAACGACAACGGCAATCTCACAGGAACATTCAACAGCTACTCATTCGGCGTCTTTGCCTCGAACTTCACCGCATACAATATTAGTTTTAAGGCAA 430 0.4093 MRLINTFYALSFFFLSIILLPSPTPTFSCDESKWNSWLISTYNVTLILTVDSNGCGNFTGVQDAIDAVPDSNSNATLIILNSGTYREKVKVNATKINLVMQGQGYLNTFIEWNDNGNLTGTFNSYSFGVFASNFTAYNISFKA 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme71008g00001 143 Pfam Pectinesterase 49 142 IPR000070 GO:0030599|GO:0042545
Trme71008g00001 143 Gene3D - 42 143 IPR012334 -
Trme71008g00001 143 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 40 142 - -
Trme71008g00001 143 SUPERFAMILY Pectin lyase-like 44 142 IPR011050 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme71008g00001 29 141 Carbohydrate Esterase AT1G05310 45.614 1.11e-20 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme71008g00001 - - vvo:131650260 182.185