Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7097g00001 ATTGCTTCAGATGGACTCAAGCATAGAGTGTTTGAGGTTTCATTGGCTGATCTTCAAGGGGATGAGGAACATGCTTTCAGGAAGATTAGGTTGAGAGCTGAAGATGTTCAAGGGAAGAATCTTTTGACAAATTTCTGGGGGATGAATTTCACAACCGACAAACTGAGGTCATTGGTTCGTAAGTGGCAATCTCTAATTGAAGCCCATGTTGATGTGAAGACTACTGATAATTACACATTGAGAATGTTTTGCATTGGATTCACCAAGAGGAGAACTAACCAGGTGAAGAGGACCTGTTATGCACAATCTAGCCAGATTAAACAGATCCGTAGGAAGATGAGAGAGATCATGGTCAACCAAGCAACATCCTGCGATTTGAAGGAATTGGTTCGTAAGTTCATTCCAGAAATGATTGGAAAAGAAATTGAGAAGGCCACATCTAGCATTTACCCTCTGCAGAATGTGTTCATTCGTAAAGTGAAGATCCTTAAAGCTCCTAAGTTTGATCTTGGAAAATTGATGGAGGTTCACGGTGATTACTCTGAGGACATCGGCACAAAGGTAGAC 567 0.4127 IASDGLKHRVFEVSLADLQGDEEHAFRKIRLRAEDVQGKNLLTNFWGMNFTTDKLRSLVRKWQSLIEAHVDVKTTDNYTLRMFCIGFTKRRTNQVKRTCYAQSSQIKQIRRKMREIMVNQATSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDIGTKVD 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7097g00001 189 SMART Ribosomal_S3Ae_2 1 166 IPR001593 GO:0003735|GO:0005840|GO:0006412
Trme7097g00001 189 Pfam Ribosomal S3Ae family 2 166 IPR001593 GO:0003735|GO:0005840|GO:0006412
Trme7097g00001 189 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 189 - -
Trme7097g00001 189 ProSitePatterns Ribosomal protein S3Ae signature. 6 18 IPR018281 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7097g00001 Trme-Chr7097 1 1300 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7097g00001 1 189 Cytoplasmic Ribosomal Protein Gene Family AT4G34670 85.263 1.47e-121 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7097g00001 K02984 - gmx:100808747 362.844