Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme70974g00001 | TTGAACGTGACTCTTGCATCGGCCAAATCAACCTCGGCTATGATGTCAACTCTCGCTAAAAGCCAGGGGCTAAAGCCAAGAGAGGCTGCAGCTATGAAGGATTGTGTCGAAGTGTTAAGTGACTCTGTTGATGAACTCCGAAGGTCTATCAATGAGATGAGTCATCTTAGTACTTCAAATTTTGAGCTAACGATGAGCGATGTACAAACTTGGGTTAGTGCTGCTTTGACGGATCAGAGTACTTGTACCGACGGATTTCAAGAGGTTAATGCGGACGGAGAAATTAAGACTATAGTGAGAGGGAGAATTGTTCAAGTAGCTCAATTGACTAGCAATGCTTTGGCTTTGATAAATAAACTTGCCACTTCACATCCTTAA | 378 | 0.4286 | MNVTLASAKSTSAMMSTLAKSQGLKPREAAAMKDCVEVLSDSVDELRRSINEMSHLSTSNFELTMSDVQTWVSAALTDQSTCTDGFQEVNADGEIKTIVRGRIVQVAQLTSNALALINKLATSHP | 125 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme70974g00001 | 125 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 1 | 120 | IPR035513 | - | |
| Trme70974g00001 | 125 | SMART | PMEI_2 | 1 | 116 | IPR006501 | GO:0004857 | |
| Trme70974g00001 | 125 | PANTHER | PECTINESTERASE INHIBITOR-LIKE | 1 | 116 | - | - | |
| Trme70974g00001 | 125 | CDD | PMEI-like_3 | 1 | 122 | - | - | |
| Trme70974g00001 | 125 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 1 | 122 | IPR035513 | - | |
| Trme70974g00001 | 125 | Pfam | Plant invertase/pectin methylesterase inhibitor | 1 | 116 | IPR006501 | GO:0004857 | |
| Trme70974g00001 | 125 | NCBIfam | pectinesterase inhibitor domain | 1 | 120 | IPR006501 | GO:0004857 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme70974g00001 | Trme-Chr70974 | 211 | 588 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme70974g00001 | 18 | 120 | Carbohydrate Esterase | AT3G14310 | 36.792 | 1.20e-17 | 75.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme70974g00001 | - | - | psat:127105069 | 201.445 |