Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme70968g00001 ATGATCGAAGGAGGCGATATATCTGCTGGAGACGGTACCGGAGGAGAATCTATATACGGACTCAAGTTTGAAGATGAAAATTTTGAATTGAAGCATGAAAGGAAAGGGATGTTATCAATGGCAAACACCGGTCCTAATACAAATGGTTCGCAGTTTTTCATCTCTACTACCCGGACAGCTCATCTAGATGGTAAGCATGTTGTATTTGGAAAAGTAGTCAAAGGAATGGGCGTAGTCCGTTTAATTGAGCATGTTACGACCGAAGATGAGGACCGTCCTGTTCTTGATGTTAAAATCGTGGATTGTGGAGAAATTCCCGAAGGAGATGATGATGGTATAACTAACTTTTTCAAAGACGGCGATACTTATCCCGATTGGCCAGCAGACCTTGCTGAGAGCCCTAGTGAACTTGAATGGTGGTTGAAATCTGTTGACTCAATCAAAGCTCTTGGTAATGAATATTACAAGAAACCAGACTTCAAAATGGCTCAAAGGAAGTATCGAAAGGCTTTACGTTACTTGGATATTTGTTGGGAGAAGGAAGGGATTGACGAAGGTATGCTTCATTTTGTTACTATTTATATCACTTTTACTATGAAATGTGCAACAACTATGCTTGAAAAGCGCTTCACCTCCTTTACACATGATAGCTAA 654 0.4037 MIEGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANTGPNTNGSQFFISTTRTAHLDGKHVVFGKVVKGMGVVRLIEHVTTEDEDRPVLDVKIVDCGEIPEGDDDGITNFFKDGDTYPDWPADLAESPSELEWWLKSVDSIKALGNEYYKKPDFKMAQRKYRKALRYLDICWEKEGIDEGMLHFVTIYITFTMKCATTMLEKRFTSFTHDS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme70968g00001 217 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 1 104 IPR002130 GO:0000413|GO:0003755
Trme70968g00001 217 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 1 103 IPR002130 GO:0000413|GO:0003755
Trme70968g00001 217 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 79 IPR002130 GO:0000413|GO:0003755
Trme70968g00001 217 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 51 63 IPR002130 GO:0000413|GO:0003755
Trme70968g00001 217 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 36 51 IPR002130 GO:0000413|GO:0003755
Trme70968g00001 217 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 105 - -
Trme70968g00001 217 Gene3D - 1 115 IPR029000 -
Trme70968g00001 217 SUPERFAMILY Cyclophilin-like 1 105 IPR029000 -
Trme70968g00001 217 Gene3D - 136 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme70968g00001 Trme-Chr70968 18 756 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme70968g00001 1 102 U-box Gene Family AT5G67530 48.544 1.73e-25 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme70968g00001 K05864 - gmx:100813496 348.206