Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme70943g00001 ATGATTGATATGGGGTTTGAGCCGCAGGTCATGGGTGTGCTGGATGCTATGCCTTCCAGTAATCTCAAACCTGAGAATGAAGACGAGGAGCTTGACGAGAAGAGGATTTACAGGACCACTTATATGTTTAGTGCCACCATGCCTCCTGCTGTAGAGAGGCTTGCTAGGAAGTATTTGAGGAACCCTGTTGTGGTGACTATCGGCACTGCTGGAAAAGCAACTGACTTGATCAGCCAGCATGTGATCATGATGAAGGAATCTGAGAAATCCTATAAGCTTCATAGATTGTTGGATGAGCTTAATGACAAGACCGCAATTGTGTTTGTTAACACCAAGAAGAATGCTGATTTTCTTGCTAAGAATTTGGATAAGGAGGGCTATCGTGTGACCACTTTGCACGGAGGGAAATCGCAGGAACAGAGGGAGATTAGTCTTGAAGGATTTAGGACCAAGAGATATAATGTGCTTGTTGCAACTGATGTTGCTGGGCGTGGTATTGACATACCTGATGTGGCTCATGTTATCAACTATGATATGCCTGGGAATATTGAAATGTACACTCATCGTATTGGGCGTACTGGTCGTGCAGGAAAGACGGGTGTGGCTACAACATTCTTGACTCTTCAGGACAGTGATGTCTTTTATGACCTTAAGCAGATGCTCATTCAGAGTAACAGTCCTGTTCCACCTGAATTGGCAAGGCATGAAGCTTCCAAATTCAAGCCAGGATCTATTCCCGACAGACCACCTCGGCGAAACGACACTGTTTTTGCTCATTAG 780 0.45 MIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKSYKLHRLLDELNDKTAIVFVNTKKNADFLAKNLDKEGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDSDVFYDLKQMLIQSNSPVPPELARHEASKFKPGSIPDRPPRRNDTVFAH 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme70943g00001 259 CDD SF2_C_DEAD 77 206 - -
Trme70943g00001 259 Pfam Helicase conserved C-terminal domain 92 197 IPR001650 -
Trme70943g00001 259 ProSiteProfiles SecA family profile. 1 233 IPR014018 -
Trme70943g00001 259 SMART helicmild6 116 197 IPR001650 -
Trme70943g00001 259 FunFam probable ATP-dependent RNA helicase DDX23 70 258 - -
Trme70943g00001 259 MobiDBLite consensus disorder prediction 234 259 - -
Trme70943g00001 259 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 92 236 IPR001650 -
Trme70943g00001 259 Gene3D - 1 69 IPR027417 -
Trme70943g00001 259 MobiDBLite consensus disorder prediction 227 259 - -
Trme70943g00001 259 Gene3D - 70 257 IPR027417 -
Trme70943g00001 259 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 236 - -
Trme70943g00001 259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 218 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme70943g00001 Trme-Chr70943 7 786 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme70943g00001 42 219 Eukaryotic Initiation Factors Gene Family AT3G19760 34.637 7.36e-35 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme70943g00001 K12858 - gmx:100799264 503.442