Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7087g00001 ATGCCAAATGTAGCTTCTGAGGACATTAAGGGATACAAGCTTTGGTATTACAAGACTAGGGGGGAATCACACACAGAAGAACCTGTTTGTGTGTTTCCAAAAGATCAGAGGAGGATTTTGATATCCAATCTTCAGGCTTGCACAGAATATACTTTTCGGATTGTATCTCATACAGATAACGGTGATCTCGGTCATTCTGAGGCTAAGTGTTTCACCAAAAGCGTTGAGATATTTGTAAAGAAACCGACTTCATCAATTGACATGAATACTAAAACGGAGGATACTCAAAGTGGAGGAGGCAACGAATCGGGCTCCAAACTGGAGATTGATCCCACAATGACATACTCCGGATTCAAGGTTCGAGACCTTGGAAAGATTTTGCACCTAGCTTGGGCTCAAGAACAAGGTTGCTTTGAGGGGTTCTGTCGTGCCGATATGAAAAATTGCTGTGGTCAAAGTGAAAAGATCAAAAACCCTATCAACCTGGAAGAGCAGTCGGCGCCGCCTATGGTTTCTCGAGACCTTGATCTGAATGTTGTTTCTGTGCCTGACTTAAACGAAGAACTCACTCCTCCTTTTGAGTCTTCTCGTGATGAAGACAATGATTGCACTTTGCAGCAGGCTGTTGAGGCAGATGATGATGCAGCCTCTCATGATTTAGAGAAAAACCTAGCAAGGCCACACGGTAGTGGTGGTTCCGAAACCTGGAACCACAGACCAACTGGAGAAGTTCCGGCTGTTGACTCGCGCGTAGTCGTAGAAGCAAGTAGGAAAAGGGTAGCAAGTACAAATGAAGAAACACATGACTGTGACAGCACTTTAATCAACGGTTCTCCTTTACATGTATCTGATGGTTCATTCTCCTTAGACGAGAACTTTGAGTATTGTGTTAAAGTAATTCGTTGGCTAGAATGTCAGGGTCATATCAACAAAGAGTTTAGGCTGAAATTACTTACATGGTTTAGTTTGAGGTCGACCGAACAAGAACGTAGGGTGGTTAATACTTTCATTCAGACACTGATCGATGATCCGAGTAGTTTGGCAGGCCAACTAGTTGACTCATTTTCTGATATTATTTCCAACAAGAGGCCAAGAAATGGATTCAGTAACAAGGCTGTGGCATTAAATTAA 1131 0.4288 MPNVASEDIKGYKLWYYKTRGESHTEEPVCVFPKDQRRILISNLQACTEYTFRIVSHTDNGDLGHSEAKCFTKSVEIFVKKPTSSIDMNTKTEDTQSGGGNESGSKLEIDPTMTYSGFKVRDLGKILHLAWAQEQGCFEGFCRADMKNCCGQSEKIKNPINLEEQSAPPMVSRDLDLNVVSVPDLNEELTPPFESSRDEDNDCTLQQAVEADDDAASHDLEKNLARPHGSGGSETWNHRPTGEVPAVDSRVVVEASRKRVASTNEETHDCDSTLINGSPLHVSDGSFSLDENFEYCVKVIRWLECQGHINKEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISNKRPRNGFSNKAVALN 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7087g00001 376 CDD FN3 2 62 IPR003961 GO:0005515
Trme7087g00001 376 Gene3D Immunoglobulins 1 96 IPR013783 -
Trme7087g00001 376 ProSiteProfiles Fibronectin type-III domain profile. 1 77 IPR003961 GO:0005515
Trme7087g00001 376 PANTHER VIN3-LIKE PROTEIN 2-RELATED 5 371 IPR044514 GO:0010048|GO:0040029
Trme7087g00001 376 MobiDBLite consensus disorder prediction 86 108 - -
Trme7087g00001 376 MobiDBLite consensus disorder prediction 222 245 - -
Trme7087g00001 376 SUPERFAMILY Fibronectin type III 8 67 IPR036116 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7087g00001 Trme-Chr7087 23 1153 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7087g00001 1 367 PHD Gene Family AT3G24440 42.368 8.02e-78 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7087g00001 - - lja:Lj2g3v0766400.1 602.053