Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme70811g00001 ATGCTTGCAAAACAAACAGGACTTACTAGGAGCCAGGTTTCAAATTGGTTCATAAATGCTCGAGTTCGACTTTGGAAACCAATGGTGGAAGAAATGTACATGGAAGAGATGAAGGAGCAAGAGATGAATGGTTCTGCTGAGGATAACAAATCAAGCATGAATATTGATGAAGACTCTTCAATGAAATCAACAACTCCACAACAAGTTCCAACCTCAGAAACAGAATCGAAAAGTTTCA 238 0.3866 MLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEMKEQEMNGSAEDNKSSMNIDEDSSMKSTTPQQVPTSETESKSF 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme70811g00001 79 MobiDBLite consensus disorder prediction 56 79 - -
Trme70811g00001 79 MobiDBLite consensus disorder prediction 36 79 - -
Trme70811g00001 79 SUPERFAMILY Homeodomain-like 1 35 IPR009057 -
Trme70811g00001 79 ProSiteProfiles 'Homeobox' domain profile. 1 27 IPR001356 GO:0003677
Trme70811g00001 79 CDD homeodomain 2 27 IPR001356 GO:0003677
Trme70811g00001 79 Gene3D - 1 68 - -
Trme70811g00001 79 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 54 - -
Trme70811g00001 79 MobiDBLite consensus disorder prediction 36 55 - -
Trme70811g00001 79 Pfam Homeobox KN domain 2 23 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme70811g00001 Trme-Chr70811 1 326 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme70811g00001 1 48 Homeobox Transcription Factor Family AT4G34610 72.917 5.07e-20 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trme70811g00001 Homeobox_KN 3.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme70811g00001 - - gmx:100810901 100.523