Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme70696g00001 ATGTGTTTTTGTTGCATTGATGATCAGAATGAAACAGGAGGCCAGCCTCCTACCGCTCCTTTGGCTCATCAGATGAGTTTGCCAAATACTACAGCGGAGTTAGCAGCCATTGAGAAGTTTTTGCAGTTCTCGGATTCTGTTCCGTGCAAAATTCGCGCCAAGCGCGGCTGCGCCACTCACCCGAGAAGCATTGCAGAAAGGGTTAGAAGAACTAAAATTAGTGAACGAATGAGGAAACTACAAGATCTTGTGCCAAACATGGATAAG 267 0.4607 MCFCCIDDQNETGGQPPTAPLAHQMSLPNTTAELAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDK 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme70696g00001 89 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 18 89 - -
Trme70696g00001 89 Gene3D - 59 89 IPR036638 GO:0046983
Trme70696g00001 89 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 60 88 IPR036638 GO:0046983
Trme70696g00001 89 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 57 89 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme70696g00001 Trme-Chr70696 66 735 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme70696g00001 21 89 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 72.222 8.46e-32 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme70696g00001 - - lja:Lj3g3v3248370.1 150.984