Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme70540g00001 ATGAATGAGTTGTTGCAAAGGAATGCAACGATTAGAAGTGTTGGTGAGGAAATGGCATGGGACGTGAGATTATACTTGGATGAATTCAATAGAAATTTTACAATCGGAGCTGGTTGGAAGTCATTTTCACAAGAACATAACTTGCAAGTCGGTGATGTATGTAAATTTGAGATGAAATTTGAGATGACTCAACGAGAACCACTTTCATTCACGATTACTATTGTTCCAGCTACAAAGAAACCATGCCCTGAGCAGTTTCAAG 262 0.3817 MNELLQRNATIRSVGEEMAWDVRLYLDEFNRNFTIGAGWKSFSQEHNLQVGDVCKFEMKFEMTQREPLSFTITIVPATKKPCPEQFQ 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme70540g00001 87 CDD B3_DNA 20 74 IPR003340 GO:0003677
Trme70540g00001 87 Gene3D - 1 79 IPR015300 -
Trme70540g00001 87 Pfam B3 DNA binding domain 15 66 IPR003340 GO:0003677
Trme70540g00001 87 ProSiteProfiles B3 DNA-binding domain profile. 1 78 IPR003340 GO:0003677
Trme70540g00001 87 SUPERFAMILY DNA-binding pseudobarrel domain 17 59 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme70540g00001 Trme-Chr70540 461 722 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme70540g00001 B3 1.1e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme70540g00001 - - tpra:123923263 150.599