Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme70513g00001 ATGCCACCAGAAGCCTTGGAGATCACAAGGAAGTTCATGAATAAGCCAGTGAGAATCCTGGTTAAGCGTGATGAATTGACCCTTGAGGGTATCAAGCAGTTTTATGTGAATGTTGACAAGGAAGAGTGGAAACTAGAGACATTATGCGACCTTTATGAGACTCTGGCTATCACTCAGAGTGTCATTTTTGTCAACACAAGGCGCAAGGTGGATTGGCTCACCGATAAAATGAGAGGAAGAGACCATACAGTCTCAGCCACCCATGGAGACATGGACCAAAACACTCGTGATATCATCATGCGTGAATTCCGCTCTGGCTCATCACGAGTCCTCATTACCACCGACCTTTTGGCTCGTGGTATTGATGTTCAGCAAGTGTCTCTCGTAATTAACTACGATCTGCCTACCCAACCTGAAAATTATCTTCACCGCATTGGTCGAAGTGGGCGTTTCGGAAGAAAAGGTGTTGCCATCAACTTTGTCACATTGGACGATGCAAGAATGCTGTCAGATATTCAGAAGTTCTATAATGTGATAGTAGAGGAATTGCCTTCAAATGTTGCCGATTTACTCTGA 576 0.4444 MPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDARMLSDIQKFYNVIVEELPSNVADLL 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme70513g00001 191 SMART helicmild6 71 152 IPR001650 -
Trme70513g00001 191 CDD SF2_C_DEAD 31 161 - -
Trme70513g00001 191 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 30 191 IPR001650 -
Trme70513g00001 191 FunFam Eukaryotic initiation factor 4A-III 25 191 - -
Trme70513g00001 191 Gene3D - 23 191 IPR027417 -
Trme70513g00001 191 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 175 - -
Trme70513g00001 191 Pfam Helicase conserved C-terminal domain 44 152 IPR001650 -
Trme70513g00001 191 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 186 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme70513g00001 Trme-Chr70513 38 613 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme70513g00001 1 191 Eukaryotic Initiation Factors Gene Family AT1G72730 94.764 1.79e-134 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme70513g00001 K03257 - cave:132165220 373.629