Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme70484g00001 ATGCTCAAGAGAAAAGCCAATGAAGGTGTTAATGTTCTTATGCTTGTTTGGGATGACAGAACTTCTGTTCCGGCTTTTAAGAAAGACGGTTTGATGGGAACACATGATCAAGAAACTGCTGAGTATTTTAAAAACACAAAGGTACATTGTGTTTTATGTCCGCGTAACCCTGATGGTGGAAAAAGTATAGTTCAAGGTTTTGAAATTTCAACTATGTTCACTCATCACCAAAAGACTATAGTTGTTGATGGCCATCATNNTNNNNNNNNNNTNNNNNNNNNNGTTATCAGTTTCATAGGTGGTATTGATCTGTGTGATGGGAGATATGATACCATGGAACACCCTTTGTTTTCAACATTGAATACAATCCATCATGATGATTTTCATCAACCAAATTTCCCAGGTGCTTCTATTAAGAAAGGTGGTCCTAGAGAACCGTGGCATGATATTCACTGCAAGCTAGAAGGACCTATTGCATGGGATGTGTTGTACAATTTTGAGCAGAGGTGGGAAAAGCAAGTTGGGAAGCAATTCTTATTCCCAATTGAA 549 0.3679 MLKRKANEGVNVLMLVWDDRTSVPAFKKDGLMGTHDQETAEYFKNTKVHCVLCPRNPDGGKSIVQGFEISTMFTHHQKTIVVDGHHXXXXXXXXVISFIGGIDLCDGRYDTMEHPLFSTLNTIHHDDFHQPNFPGASIKKGGPREPWHDIHCKLEGPIAWDVLYNFEQRWEKQVGKQFLFPIE 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme70484g00001 183 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 71 108 IPR001736 GO:0003824
Trme70484g00001 183 PANTHER PHOSPHOLIPASE D 1 177 IPR015679 -
Trme70484g00001 183 Pfam Phospholipase D Active site motif 71 108 IPR001736 GO:0003824
Trme70484g00001 183 Gene3D Endonuclease Chain A 1 179 - -
Trme70484g00001 183 SMART pld_4 71 108 IPR001736 GO:0003824
Trme70484g00001 183 SUPERFAMILY Phospholipase D/nuclease 2 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme70484g00001 Trme-Chr70484 1 549 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme70484g00001 6 182 Phospholipase D Gene Family (Wang group) AT5G25370 73.596 3.71e-93 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme70484g00001 K01115 - gmx:100791688 318.161