Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7047g00001 ATGAATAAAATCGAAGATAACAATACACTGGTCTTTATTGTCGATCTCCGTGCTGATAAAAAGAAAGTTAAAGATGCTGTGAAGAAAATGCATGACATTCAGGCTAAGAAAGTGAACACTTTGATCAGGCCTGATGGTACTAAGAAAGCCTATGTCCGGTTGACTCCACATTACGATGCATTGGATGTTGCCAACAAAATTGGCATCATCTAA 213 0.3803 MNKIEDNNTLVFIVDLRADKKKVKDAVKKMHDIQAKKVNTLIRPDGTKKAYVRLTPHYDALDVANKIGII 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7047g00001 70 FunFam 50S ribosomal protein L23 1 70 - -
Trme7047g00001 70 ProSitePatterns Ribosomal protein L23 signature. 48 63 IPR001014 GO:0019843
Trme7047g00001 70 Gene3D - 1 70 IPR012677 -
Trme7047g00001 70 Pfam Ribosomal protein L23 3 50 IPR013025 GO:0003735|GO:0005840|GO:0006412
Trme7047g00001 70 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1 63 IPR012678 GO:0003735|GO:0005840|GO:0006412
Trme7047g00001 70 PANTHER 60S RIBOSOMAL PROTEIN L23A 1 70 IPR013025 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7047g00001 Trme-Chr7047 51 644 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7047g00001 1 70 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 91.429 3.30e-33 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7047g00001 K02893 - rcu:8286107 128.257