Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme70419g00001 CAGGTTTCTAAAGATGATGCCGGCACCATTCGGATTCAACAACCCCAGTCAGGACCATTTTATGTCTCTCCCAACACAATTGATCAGCTTATAATTGCTAATCATGGGRATTTGGTCAGGTGGTGTAAGTATGCATCGATTGGATTTTCAATATTTGGTTCTTGTATAATAGCTATGCATACTATTCAATACATCTTGACATGGCGACGACAATGTGAAATGCATAAAAGGGTACTTGAGGCAGCTGCTATTGCTAAGATGTCAAAACAGCGTAATGAAGGTAAAACGGATGACGACTTCTCAGATTTGTGTGTGATATGCATTGATCAGAAATACAATGTTGCTTTTGTCCCGTAA 357 0.3922 QVSKDDAGTIRIQQPQSGPFYVSPNTIDQLIIANHGBLVRWCKYASIGFSIFGSCIIAMHTIQYILTWRRQCEMHKRVLEAAAIAKMSKQRNEGKTDDDFSDLCVICIDQKYNVAFVP 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme70419g00001 118 Pfam E3 Ubiquitin ligase 1 55 IPR022170 GO:0004842|GO:0006996|GO:0016567
Trme70419g00001 118 PANTHER - 2 118 IPR044231 GO:0004842|GO:0016567
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme70419g00001 4 94 C3H Transcription Factor Family AT1G63900 48.352 8.80e-20 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme70419g00001 K15688 - qsa:O6P43_010668 128.257