Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme70397g00001 ATGGCACAACAGAAGTCGTCCATCAAATACTATGATGCCAATGATGCAGATACCGAAACTTTCCACGATGCCTACAATGATAGTAACCGCCATAACAACATATCCCTTGCTTCATGGGAAGGATGTTTTCTGAAATCCTTCGATGAAATGGATGATCATCTTGCTCAGGAAGTTAACACTGATAGCTATTGCAGTGGTTGCACAGCTGTAACTCTAATTAAACAGGGTGACCAGTTGATAGTCGGAAATTTGGGCGATTCTCGTGCAGTTCTTTGCATGAAGGATAGAGATCAACTTATTTCTGTTCAACTTACCGTTGACTTGAAACCGGATATTCCAAGCGAAGCGTCAAGAATCTTTAACTGTGAAGGTAGGGTTTTCGCTGCAGAAGAAGAACCGGATGTATACAGATTATGGATGCCTGATGATGACTGTCCT 438 0.4201 MAQQKSSIKYYDANDADTETFHDAYNDSNRHNNISLASWEGCFLKSFDEMDDHLAQEVNTDSYCSGCTAVTLIKQGDQLIVGNLGDSRAVLCMKDRDQLISVQLTVDLKPDIPSEASRIFNCEGRVFAAEEEPDVYRLWMPDDDCP 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme70397g00001 146 SUPERFAMILY PP2C-like 29 128 IPR036457 -
Trme70397g00001 146 Gene3D - 3 145 IPR036457 -
Trme70397g00001 146 ProSiteProfiles PPM-type phosphatase domain profile. 7 146 IPR001932 -
Trme70397g00001 146 PANTHER PROTEIN PHOSPHATASE 26 129 IPR015655 GO:0004722|GO:0006470
Trme70397g00001 146 CDD PP2Cc 29 127 IPR001932 -
Trme70397g00001 146 Pfam Protein phosphatase 2C 29 127 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme70397g00001 Trme-Chr70397 1 741 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme70397g00001 39 146 PP2C-type Phosphatase Gene Family AT1G03590 59.633 6.37e-41 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme70397g00001 - - mtr:11405988 263.462