Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7034g00001 GTTATATTGCCGTCTCTTCAGCGGCTTCACGGTAGCTTTGATGACAAGTTGGAGACTTGTGAAGACGGGAATGCGTGTTTAGAAGGTTCAAGTTGTGGTAATAAGGTAATTGAAGGAGATGGGAAACTAACCAATGTTGATTTACAAAGAGAAGATGAATGTGGGATTTGCTTAGAGCCTTGTACCAAAATGGTTTTACCTAATTGCTGTCACGCCATGTGCATCAAATGCTACCGCAAGTGGAACAGAAAGTCAGAGTCGTGTCCTTTTTGCCGCGGTAGCTTAAGGAGGGTTAACTCGGAGGATCTATGGGTATTAACTTGTGATGAAGATGTTGTTGATACTGAAACAGTTTCTAAAGAGGACTTGTTGCGTTTTTACCTCTATATCAACAAACTCCCCAAAGATAGCCCAGATGCACTTTTCCTAATGTATTATGAATACCTGATTTGA 453 0.4106 VILPSLQRLHGSFDDKLETCEDGNACLEGSSCGNKVIEGDGKLTNVDLQREDECGICLEPCTKMVLPNCCHAMCIKCYRKWNRKSESCPFCRGSLRRVNSEDLWVLTCDEDVVDTETVSKEDLLRFYLYINKLPKDSPDALFLMYYEYLI 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7034g00001 150 SMART ring_2 54 91 IPR001841 -
Trme7034g00001 150 ProSiteProfiles Zinc finger RING-type profile. 54 92 IPR001841 -
Trme7034g00001 150 PANTHER RING FINGER PROTEIN 41, 151 4 148 - -
Trme7034g00001 150 Pfam Ring finger domain 52 92 IPR001841 -
Trme7034g00001 150 SUPERFAMILY RING/U-box 45 96 - -
Trme7034g00001 150 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 103 IPR013083 -
Trme7034g00001 150 FunFam RING/U-box superfamily protein 36 101 - -
Trme7034g00001 150 ProSitePatterns Zinc finger RING-type signature. 69 78 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7034g00001 Trme-Chr7034 116 893 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7034g00001 53 95 RAD5 or RAD16-like Gene Family AT5G05130 38.636 3.05e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7034g00001 - - mtr:11441072 305.834