Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme70200g00001 ATGATGAGGCGGATGAAAAAGGAGATTGAGGATGAGATGTTCCACGATGGTGAGACTGGGTTACAGTTGGATGATGAGGGTTATGATGGAAGTGCCTGTGGAGTTGTTCTGAAGAAAGGGCCATGGACATCTGCTGAAGATGATATTTTGGTCAATTATGTCAAGAAGAATGGAGAGGGGAACTGGAATGCCGTTCATAAGCATACTGGCCTACTACGTTGCGGAAAAAGTTGTCGATTGCGGTGGGCTAATCACCTAAGGCCAAATTTAAAGAAAGGGACATTTACTGCACAAGAGGAGCAGTTGATTTGTGAGCTTCATGCAAAAATGGGAAACAAATGGGCACGCATGGCAAGCTTT 360 0.4472 MMRRMKKEIEDEMFHDGETGLQLDDEGYDGSACGVVLKKGPWTSAEDDILVNYVKKNGEGNWNAVHKHTGLLRCGKSCRLRWANHLRPNLKKGTFTAQEEQLICELHAKMGNKWARMASF 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme70200g00001 120 Gene3D - 38 91 - -
Trme70200g00001 120 Gene3D - 94 120 - -
Trme70200g00001 120 ProSiteProfiles Myb-like domain profile. 37 86 IPR001005 -
Trme70200g00001 120 ProSiteProfiles Myb-like domain profile. 87 120 IPR001005 -
Trme70200g00001 120 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 120 IPR017930 -
Trme70200g00001 120 SUPERFAMILY Homeodomain-like 40 116 IPR009057 -
Trme70200g00001 120 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 90 IPR017930 -
Trme70200g00001 120 FunFam MYB-related transcription factor 38 91 - -
Trme70200g00001 120 CDD SANT 41 86 IPR001005 -
Trme70200g00001 120 SMART sant 38 88 IPR001005 -
Trme70200g00001 120 Pfam Myb-like DNA-binding domain 42 102 - -
Trme70200g00001 120 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 6 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme70200g00001 Trme-Chr70200 169 528 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme70200g00001 24 119 MYB Transcription Factor Family AT5G06100 74.490 4.18e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trme70200g00001 Myb_DNA-bind_6 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme70200g00001 K09422 - gmx:100810415 197.978