Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme70158g00001 CCAATTGAATTGGTTGTCTGGCTTCCAGCATTGTGCAGGAAGATGGAGATTCCATACTGTATCGTCAAGGGCAAGGCCCGTCTTGGAACTGTTGTCCACAAGAAAACTGCATCTGTTTTGTGCTTGACAACTGTTAAAAATGAAGATAAAATGGAGTTCAGCAGGGTCCTAGAGGCGATCAAGGCAAACTTCAACGACAAATATGATGAGTATAGGAAGAAGTGGGGTGGTGGAATCATGGGTTCCAAATCCCAAGCCAAAACCAAGGCGAAGGAAAGGCTCATTGCCAAGGAGGCTGCCCAGAGGATGACCTAG 315 0.4667 PIELVVWLPALCRKMEIPYCIVKGKARLGTVVHKKTASVLCLTTVKNEDKMEFSRVLEAIKANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLIAKEAAQRMT 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme70158g00001 104 ProSitePatterns Ribosomal protein L7Ae signature. 12 29 IPR004037 GO:0042254|GO:1990904
Trme70158g00001 104 PRINTS Ribosomal protein L7A family signature 31 55 IPR001921 -
Trme70158g00001 104 PRINTS Ribosomal protein L7A family signature 63 83 IPR001921 -
Trme70158g00001 104 SUPERFAMILY L30e-like 1 61 IPR029064 -
Trme70158g00001 104 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 1 87 - -
Trme70158g00001 104 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 1 52 IPR004038 -
Trme70158g00001 104 PRINTS Ribosomal protein L7A/RS6 family signature 19 33 IPR018492 -
Trme70158g00001 104 PRINTS Ribosomal protein L7A/RS6 family signature 9 19 IPR018492 -
Trme70158g00001 104 Gene3D - 1 98 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme70158g00001 Trme-Chr70158 2 500 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme70158g00001 1 104 Cytoplasmic Ribosomal Protein Gene Family AT2G47610 89.423 1.82e-67 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme70158g00001 K02936 - gmx:100792324 207.223