Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme70089g00001 GGTGTACTTTCCAACGGGGAAGAGGTAGCTGTGAAGAGGCTTTTGGGAAGCTCTAAGCAAGGTGCAAGAGAATTTAAGAATGAGCACTGTTACTGTTATTACAGTTCAACTCTTAAGTTAAATAGAAGACAATTAGATTGGCATGAAAGGCACAAGATTATTGGAGGAATTGCTCGAGGAATTCTTTATCTTCATGAGGATTCACGCCTTAAAATTATACACCGTGATCTAAAACCTAGTAATGTTTTGCTAGACAGTAACATGGATCCAAAAATCTCAGATTTCGGTATGGCAAGAATTGTTGCTACGGATAATATTGAAGAAAATACACACAGAATTGTTGGAACATAG 351 0.3732 GVLSNGEEVAVKRLLGSSKQGAREFKNEHCYCYYSSTLKLNRRQLDWHERHKIIGGIARGILYLHEDSRLKIIHRDLKPSNVLLDSNMDPKISDFGMARIVATDNIEENTHRIVGT 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme70089g00001 116 SUPERFAMILY Protein kinase-like (PK-like) 2 116 IPR011009 -
Trme70089g00001 116 Pfam Protein kinase domain 41 106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme70089g00001 116 FunFam Os07g0541700 protein 37 116 - -
Trme70089g00001 116 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 29 - -
Trme70089g00001 116 ProSiteProfiles Protein kinase domain profile. 1 116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme70089g00001 116 Gene3D Phosphorylase Kinase; domain 1 1 40 - -
Trme70089g00001 116 ProSitePatterns Serine/Threonine protein kinases active-site signature. 72 84 IPR008271 GO:0004672|GO:0006468
Trme70089g00001 116 Gene3D Transferase(Phosphotransferase) domain 1 41 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme70089g00001 Trme-Chr70089 92 574 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme70089g00001 1 116 Receptor kinase-like Gene Family AT4G23230 50.336 2.79e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme70089g00001 Pkinase 8.3e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme70089g00001 - - tpra:123882552 186.037