Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme700837g00001 | ATGGGATTCATTGCTCCAGCTAATATAACAGGAGCACCAGCACTCCTTGTGCTTTCTGATAGGGCAGTATTCTTCAACTGCAAAATTGATGGCGAGGAAGGAAGCTTATACGCAGTTGCGCAACGCCAATTCTATAGAGACTGCGAGATTCGCGGTAGTGTAGACATCATCAAAGGAGACTCATCAACCTTAATTCAAAACTCAATAATCATTGTGAAGCATCG | 224 | 0.433 | MGFIAPANITGAPALLVLSDRAVFFNCKIDGEEGSLYAVAQRQFYRDCEIRGSVDIIKGDSSTLIQNSIIIVKHR | 75 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme700837g00001 | 75 | SUPERFAMILY | Pectin lyase-like | 11 | 73 | IPR011050 | - | |
| Trme700837g00001 | 75 | Coils | Coil | 73 | 75 | - | - | |
| Trme700837g00001 | 75 | Pfam | Pectinesterase | 9 | 73 | IPR000070 | GO:0030599|GO:0042545 | |
| Trme700837g00001 | 75 | Gene3D | - | 4 | 75 | IPR012334 | - | |
| Trme700837g00001 | 75 | PANTHER | PECTINESTERASE | 11 | 73 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme700837g00001 | Trme-Chr700837 | 1 | 224 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme700837g00001 | 1 | 74 | Carbohydrate Esterase | AT2G47030 | 48.684 | 1.19e-17 | 73.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme700837g00001 | K01051 | - | gmx:102665007 | 127.487 |