Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme70076g00001 TGTTTTGAATTTACAGTCACTGGCGGAGGGGTTTGTAAGCAAAACAAGTCTTCCTCAAAGAAAATGGCAACAGATATCAGTTTGGAAGGAGATATTCCGAGTCTTCAACCAGTTGTAGATATTGACAGAAAGCAAGATTCAGAGAAGAGCAAGGCCAAAGATGAAAAAACCGACACAGTACCCTTATACAAGCTTTTCTCATTTTCTGATCCTTTGGATCGTTTATTGATGTTTGTGGGGACTTTGGGTGCTATTGGGAATGGAATATCTATACCCTTGATGCTTTTAATATTTGGAACTTTGATCAATGCATTTGGAGATTACAAGGACTCAGACGTTGTTGATGAAGTCTCCAAGATGTCTCTAAAACTTGTATACTTGGGGGCAGGTACCTTTGTTGCGGCATTTTTGCGTAAAATTAACTTGCTGGATGATCACTGGTGA 444 0.3941 CFEFTVTGGGVCKQNKSSSKKMATDISLEGDIPSLQPVVDIDRKQDSEKSKAKDEKTDTVPLYKLFSFSDPLDRLLMFVGTLGAIGNGISIPLMLLIFGTLINAFGDYKDSDVVDEVSKMSLKLVYLGAGTFVAAFLRKINLLDDHW 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme70076g00001 147 Gene3D ABC transporter type 1, transmembrane domain 55 143 IPR036640 GO:0005524|GO:0016020
Trme70076g00001 147 SUPERFAMILY ABC transporter transmembrane region 65 139 IPR036640 GO:0005524|GO:0016020
Trme70076g00001 147 PANTHER ABC TRANSPORTER B FAMILY 41 139 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme70076g00001 Trme-Chr70076 108 763 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme70076g00001 53 136 Calmodulin-binding Proteins AT2G36910 33.721 2.25e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme70076g00001 K05658 - lja:Lj4g3v2227840.1 167.162