Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme70040g00001 ATGGACAAAAATCCTCATTCAGAAATTCAACTCCCTCCTGGATTTAGATTTCATCCTTCTGATGCAGAACTCATTGTTCACTATCTAAGAAACAAAGTGAATTCATCTCCTCTTCCTGCTTCATTCATAGCAGAAATAGATCTTTACAAATACAATCCATGGGAGCTTCCAAGTAAAGCTTTGTTTGGAGAGGAAGAATGGTATTTCTTTACTCCAAGGGACAGAAAGTATCCCAAAGGATTGAGGCCTAATAGAGCAGCTGGTGCAGGTTATTGGAAAGCTACTGGAACTGATAAACCTATTCTTACTTCATGTTGCATGATTCAATGA 330 0.3818 MDKNPHSEIQLPPGFRFHPSDAELIVHYLRNKVNSSPLPASFIAEIDLYKYNPWELPSKALFGEEEWYFFTPRDRKYPKGLRPNRAAGAGYWKATGTDKPILTSCCMIQ 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme70040g00001 109 ProSiteProfiles NAC domain profile. 11 109 IPR003441 GO:0003677|GO:0006355
Trme70040g00001 109 Gene3D NAC domain 20 108 IPR036093 GO:0003677|GO:0006355
Trme70040g00001 109 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 103 - -
Trme70040g00001 109 Pfam No apical meristem (NAM) protein 12 101 IPR003441 GO:0003677|GO:0006355
Trme70040g00001 109 SUPERFAMILY NAC domain 8 103 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme70040g00001 Trme-Chr70040 223 733 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme70040g00001 10 103 NAC Transcription Factor Family AT1G61110 77.660 1.99e-52 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme70040g00001 NAM 2.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme70040g00001 - - lja:Lj1g3v4579400.1 213.001