Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme69893g00001 TCGCGCAAAGGGTCTACTTTCAGCAGAGGTGAAATTATTGGGATAGCAGGCGGGAGCACATTTCTACTATTGTGCCTCATAGGGTTAATTGTATACGCAATCCTACAAAAGAAGCGCGCAGAGAAAGCCATTGGAATAAGTAGACCATTTGCATCATGGGCACCAAGTGGCAAGGATAGTGGAGGTGCACCACAATTGAAGGGAGCAAGATGGTTCTCTTATGATGAACTTAAAAAGTGCACAAACAATTTCTCTGGAAGCAACGAACTAGGCTTTGGTGGCTATGGCAAGGTGTACAAAGGGGTATTCCCTGATGGAAAAATAGTTGCAATCAAAAGAGCTCAGCAAGGATCAATGCAAGGAGGCCTAGAGTTCAAGAATGAAATCGAGTTACTTTCAAGAGTTCATCACAAGAATCTTGTTAGCCTAGTTGGATTCTGCTTTGAACAAGGAGAACAAATGTTGGTTTATGAATTTATCTCCAATGGAACACTTAGGGAGA 502 0.4243 SRKGSTFSRGEIIGIAGGSTFLLLCLIGLIVYAILQKKRAEKAIGISRPFASWAPSGKDSGGAPQLKGARWFSYDELKKCTNNFSGSNELGFGGYGKVYKGVFPDGKIVAIKRAQQGSMQGGLEFKNEIELLSRVHHKNLVSLVGFCFEQGEQMLVYEFISNGTLRE 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme69893g00001 167 FunFam Leucine-rich repeat protein kinase family protein 52 159 - -
Trme69893g00001 167 Pfam Protein tyrosine and serine/threonine kinase 88 166 IPR001245 GO:0004672|GO:0006468
Trme69893g00001 167 Gene3D Phosphorylase Kinase; domain 1 57 159 - -
Trme69893g00001 167 ProSitePatterns Protein kinases ATP-binding region signature. 90 112 IPR017441 GO:0005524
Trme69893g00001 167 ProSiteProfiles Protein kinase domain profile. 84 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme69893g00001 167 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 5 165 - -
Trme69893g00001 167 SUPERFAMILY Protein kinase-like (PK-like) 67 166 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme69893g00001 Trme-Chr69893 8 753 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme69893g00001 3 167 Receptor kinase-like Gene Family AT1G79620 72.727 5.17e-80 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Trme69893g00001 PK_Tyr_Ser-Thr 1.4e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme69893g00001 - - cam:101498992 294.278