Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme69856g00001 ATGGATTCATGGAGTTTTGTTCCTGAAGATAATAAAGGGTATGTTTCTAAAGGTTCAATCTTGGGTTGGGAACTTAAAACCCCATCTAGTTTTTTAGGTCAACAAAACATTGAAAATGACAATAATCAAGGTTTTGAGGAATTGGGTTTTCATGGAATGTTGGGAAAACAATTGTCTAATGTTGTTGATGTTGNNNNNNNTGTTGATGATGTTCATACCAGAAAGATGGATAATGATGTTGTTATGGCTGCACCAAATGCATTTTCTGGAAGAGAACTTTCAAACTCATTAGGAGAAACTAATGGATGTAATTCACTCATTGATTTGAAGCTTGGTAGATTTGGTGATCATGGAGATGCAATTGGAACATCATTTTCAAAAGGGACTGCGATTTTATCGTCGTCTGGATCATCGTCAACACCGCCTAAGAGAGTGCGGTCTTCCAGCGTTCATTCTCAAGTTGCTTACTGCCAAGTCTATGGTTGTAATAAAGATCTGAGTGGTTGTAAAGATTATCACAAAAGGCACAAAGTTTGTGAGGTTCATTCAAAGACTTCTAAAGTTATAGTCAATG 574 0.3624 MDSWSFVPEDNKGYVSKGSILGWELKTPSSFLGQQNIENDNNQGFEELGFHGMLGKQLSNVVDVXXXVDDVHTRKMDNDVVMAAPNAFSGRELSNSLGETNGCNSLIDLKLGRFGDHGDAIGTSFSKGTAILSSSGSSSTPPKRVRSSSVHSQVAYCQVYGCNKDLSGCKDYHKRHKVCEVHSKTSKVIVN 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme69856g00001 191 Pfam SBP domain 157 190 IPR004333 GO:0003677
Trme69856g00001 191 Gene3D - 153 191 IPR036893 GO:0003677|GO:0005634
Trme69856g00001 191 SUPERFAMILY SBT domain 155 191 IPR036893 GO:0003677|GO:0005634
Trme69856g00001 191 ProSiteProfiles Zinc finger SBP-type profile. 154 191 IPR004333 GO:0003677
Trme69856g00001 191 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 46 191 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme69856g00001 Trme-Chr69856 211 784 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme69856g00001 107 191 SBP-box Gene Family AT1G69170 52.941 5.48e-20 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trme69856g00001 SBP 2.7e-08 No_clan