Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme69818g00001 ATGGATAAAGATGTTGAACAGGTTCTTAAAAGAGTTAAAATCATAAAAGGTAAGCTTGAAGCATTAGAACGTTCGAATGCCGCGAATAGAAATATTCCGGGATGTGGTCCAGGTTCATCAGCAGATAGAACAAGAACTTCTGTGGTTAGTGGATTGGGAAAAAAACTTAAAGATATGATGGATGATTTTCAAGGATTAAGAGCTAGAATGCAACAAGAATATAAGGAAACAATTGAAAGAAGGTATTTTACAATAACAGGTGAAAAAGCTGATGAAGATACTATTGAGAATTTGATATCAAGTGGTGAAAGTGAAACTTTTATGCAAAGAGCAATTCAAGAACAAG 346 0.3382 MDKDVEQVLKRVKIIKGKLEALERSNAANRNIPGCGPGSSADRTRTSVVSGLGKKLKDMMDDFQGLRARMQQEYKETIERRYFTITGEKADEDTIENLISSGESETFMQRAIQEQ 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme69818g00001 115 SUPERFAMILY t-snare proteins 2 115 IPR010989 GO:0016020|GO:0016192
Trme69818g00001 115 CDD SynN 1 111 IPR006011 GO:0016020
Trme69818g00001 115 Gene3D - 1 115 - -
Trme69818g00001 115 Pfam Syntaxin 1 115 IPR006011 GO:0016020
Trme69818g00001 115 Coils Coil 5 25 - -
Trme69818g00001 115 SMART SynN_4 1 75 IPR006011 GO:0016020
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme69818g00001 1 115 SNARE and Associated Proteins AT1G11250 80.870 1.06e-65 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme69818g00001 K08486 - gmx:100818999 215.698