Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6970g00001 ATGGTAACCACAGCAACTGCTCAGGCAGCAGTTGCTACTGCCCAAGCAGCTGTTGAAGTCATGAGGCTTGCCAGTCCTTCTAAAATTGCCAGAAAATACTACAATGCAGCTGTTGTTATTCAAACAGCATTCAGAGGCTATCTGGCAAGAAGAGCTCTTCGGGCACTTAAAGGAATTGTAAAAATACAAGCTTTAGTTAGAGGACACAATGTCAGGAAACAAGCAAAGATGACTCTCCGATGCATTGAGTCTCTTGTTCGAGTTCAAACTAGAGTTCGTGATCAACGTAGGAGGCTTTCTTATGAAGGAAACAAAGAATCTAACTTCGGTGTATCCAACAGCTTGAGAGAAATTCATGTCTCTAGAGTGGGTTAA 375 0.424 MVTTATAQAAVATAQAAVEVMRLASPSKIARKYYNAAVVIQTAFRGYLARRALRALKGIVKIQALVRGHNVRKQAKMTLRCIESLVRVQTRVRDQRRRLSYEGNKESNFGVSNSLREIHVSRVG 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6970g00001 124 Gene3D - 30 81 - -
Trme6970g00001 124 PANTHER IQ-DOMAIN 5-RELATED 4 103 - -
Trme6970g00001 124 Pfam IQ calmodulin-binding motif 57 76 IPR000048 GO:0005515
Trme6970g00001 124 Pfam IQ calmodulin-binding motif 35 54 IPR000048 GO:0005515
Trme6970g00001 124 ProSiteProfiles IQ motif profile. 57 84 IPR000048 GO:0005515
Trme6970g00001 124 ProSiteProfiles IQ motif profile. 33 61 IPR000048 GO:0005515
Trme6970g00001 124 SMART iq_5 32 54 IPR000048 GO:0005515
Trme6970g00001 124 SMART iq_5 55 76 IPR000048 GO:0005515
Trme6970g00001 124 FunFam IQ-domain 11 32 83 - -
Trme6970g00001 124 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 77 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6970g00001 Trme-Chr6970 19 497 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6970g00001 3 117 IQD Protein Family AT1G01110 60.331 1.61e-38 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6970g00001 - - dcr:108211725 164.081