Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme696858g00001 AGCTCGGCTATGGTTACTTGGCCTGTAAGATTGAACATTGCACTAGAAACAGCTGAGGCATTAGCCTACCTCCATAAAAAAGATGTCATACACCGCGATGTGAAATCCAACAACATTCTCCTTGACGAAAAGTTTCATGTTAAGGTTGCTGATTTCGGTCTCTCAAGGCTATTTCCAACTGATGTCACACATGTATCAACTGCTCCACAAGGAACACCTGGTTATGTTGATCCTGAGTATTATCAGTGTTAC 252 0.4206 SSAMVTWPVRLNIALETAEALAYLHKKDVIHRDVKSNNILLDEKFHVKVADFGLSRLFPTDVTHVSTAPQGTPGYVDPEYYQCY 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme696858g00001 84 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 4 84 IPR044652 GO:0004672
Trme696858g00001 84 SUPERFAMILY Protein kinase-like (PK-like) 5 84 IPR011009 -
Trme696858g00001 84 ProSiteProfiles Protein kinase domain profile. 1 84 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme696858g00001 84 Gene3D Transferase(Phosphotransferase) domain 1 1 84 - -
Trme696858g00001 84 Pfam Protein kinase domain 12 80 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme696858g00001 84 ProSitePatterns Serine/Threonine protein kinases active-site signature. 29 41 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme696858g00001 Trme-Chr696858 1 252 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme696858g00001 3 84 Receptor kinase-like Gene Family AT1G25390 75.610 5.70e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trme696858g00001 Pkinase 4.2e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme696858g00001 - - lja:Lj1g3v3289980.3 160.614