Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme69676g00001 GTGAGCTGTAAATTTGTTAATTTAACAAGATGGAAGGTTGCCATTTGTGGCGAGTATATGAAGTCAGGTTACAAGACTTGTTCCCATGGAACAGCTTGCAATTTTATCCATTGTTTCCGTAATCCTGGTGGAGACTATGGATGGGCCGATTCTGACAAACCACCCCCGAAATTTTGGGTTAATGAGATGGTTGCTTTATTTGGTCATTCTGATGATGATCATGGAAATTTTAGTGCACTGAAGCACTCCAGCAATGTCCCAAAAACAGATTCTGACAGGTGCGCTTTCAATTGA 294 0.4116 VSCKFVNLTRWKVAICGEYMKSGYKTCSHGTACNFIHCFRNPGGDYGWADSDKPPPKFWVNEMVALFGHSDDDHGNFSALKHSSNVPKTDSDRCAFN 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme69676g00001 97 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 1 83 IPR009145 GO:0000398|GO:0003723|GO:0089701
Trme69676g00001 97 ProSiteProfiles Zinc finger C3H1-type profile. 10 40 IPR000571 GO:0046872
Trme69676g00001 97 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 11 39 IPR000571 GO:0046872
Trme69676g00001 97 SMART c3hfinal6 10 39 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trme69676g00001 zf-CCCH 1e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme69676g00001 K24273 - cam:101495256 177.178