Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme696391g00001 AGGGTGAATGTTATTAAAGATGTAGCTAATGCGTTATGCTATATGCACCATGATTGCTCCCCATCGATTGTTCATCGAGATATATCAAGCAAGAATATTCTTCTGGATTTAGAATATGTTGCTCATGTCTCCGACTTTGGAACAGCTAAGCTTCTTAATCCAGATTCATCCAACTGGACCTCTTTTGTAGGCACCTTTGGATATGCTGCTCCAGGTTAA 219 0.3973 RVNVIKDVANALCYMHHDCSPSIVHRDISSKNILLDLEYVAHVSDFGTAKLLNPDSSNWTSFVGTFGYAAPG 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme696391g00001 72 Gene3D Transferase(Phosphotransferase) domain 1 1 72 - -
Trme696391g00001 72 PANTHER LEUCINE RICH REPEAT KINASE 2 1 71 - -
Trme696391g00001 72 ProSitePatterns Tyrosine protein kinases specific active-site signature. 23 35 IPR008266 GO:0004672|GO:0006468
Trme696391g00001 72 ProSiteProfiles Protein kinase domain profile. 1 72 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme696391g00001 72 SUPERFAMILY Protein kinase-like (PK-like) 2 71 IPR011009 -
Trme696391g00001 72 Pfam Protein kinase domain 3 71 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme696391g00001 Trme-Chr696391 2 220 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme696391g00001 1 72 Receptor kinase-like Gene Family AT4G08850 70.833 7.59e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme696391g00001 Pkinase 9.4e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme696391g00001 - - gmx:100813639 142.51