Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6958g00002 ATGTCTATTAGAAAACCCCCATTCCCTCGGCTCCTCCTTAACAATGTCTCTTGCATGAGAAATGGCCAGCAAATTCTGTCTCACGTGAATGTCACTCTTCATGATGGAGGGGCATTAGTGCTAACAGGTGCAAATGGCGCAGGAAAGACAACTTTCTTGCGCATGCTAGCTGGGTTTTCTCGTCCTTCTGCAGGTGAAGTCCTTTGGAATGGCCATGACATTCAAAAATCTGCAATCTTCCATCAGTATAAACTTCAGCTTAACTGGGTCTCTGGCAAGGATGCAATTAATGATAAGTTTAATGTTCTGGACAATATTCAATGGTTTGAACTTCTTGAAGGCAAGCACGGGAAGGCTATGCCTGCGCTTGAGTTGATGGGACTAGGAAGATTGGCTAAGGAAAAGCCAAAGATGCTTTCAATGGGCCAGCGAAAAAGATTGCAACTTGCCAGAATGCTCGCAATTGATCGCCCCATATGGTTGCTAGATGAGCCTTCAGTTGCATTAGATGATGAAGGTGTAAAGATACTCGAGTTCATTATTGCAGAACACAGGAAACAAGGAGGAATTGTTATTGTAGCAACTCATTTACCCATTGAGATAGAAGATTCCATGCTCTTGAGACTGCCGCCAAGGTTTCCAAGGAGGATGTCACATCCAGATATGCTTGGCCGGGATATGGATATTAGTTAA 693 0.4387 MSIRKPPFPRLLLNNVSCMRNGQQILSHVNVTLHDGGALVLTGANGAGKTTFLRMLAGFSRPSAGEVLWNGHDIQKSAIFHQYKLQLNWVSGKDAINDKFNVLDNIQWFELLEGKHGKAMPALELMGLGRLAKEKPKMLSMGQRKRLQLARMLAIDRPIWLLDEPSVALDDEGVKILEFIIAEHRKQGGIVIVATHLPIEIEDSMLLRLPPRFPRRMSHPDMLGRDMDIS 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6958g00002 230 PANTHER ABC TRANSPORTER I FAMILY MEMBER 1 6 221 IPR005895 GO:0017004|GO:0022857
Trme6958g00002 230 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 202 IPR027417 -
Trme6958g00002 230 Gene3D - 8 207 IPR027417 -
Trme6958g00002 230 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 11 229 IPR003439 GO:0005524
Trme6958g00002 230 NCBIfam heme ABC exporter ATP-binding protein CcmA 13 208 IPR005895 GO:0017004|GO:0022857
Trme6958g00002 230 Pfam ABC transporter 26 166 IPR003439 GO:0005524
Trme6958g00002 230 SMART AAA_5 35 223 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6958g00002 Trme-Chr6958 1143 1835 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6958g00002 24 178 Calmodulin-binding Proteins AT2G36910 27.439 1.99e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6958g00002 - - tpra:123910081 428.328