Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6954g00001 ATGAGATCAGATGTTTCTTATCAGCAATTGTGTTTGAATCGTTCTATTCATGGATTGATTTTCAACTTTTACTGGTCTGGGCAACCTCAGATGATGAATGGAGCTGGTCAAAAACTGACTACTAATGATGCCTTAGCGTATCTCAAGGCAGTAAAGGATATTTTTCAAGATAAGAGGGATAAATATGATGAATTTTTGGAGGTCATGAAAGATTTTAAAGGACAGAGAATTGATACTGTGGGTGTCATAGCTAGAGTGAAGGATCTTTTTAGAGGTCACACAGATTTGATATTAGGATTCAACACCTTTTTGCCAAAGGGATACGAAATCACCCTTCCGATAGAGGATGAGCAACCTCACCCAAAAAAGCCAGTTGAATTTAATGAAGCTATGAGTTATGTGAACAAGATAAAGACTCGGTTTCGTGGTGATGATCGTGTTTACAAGTCATTTCTAGAAATATTGAATATGTACAGAAAGGAAAATAAGTCTATCGACGCGGTCTACCAGGAGGTTGCTGCACTCTTTGAAGACCACCCAGATCTTCTTGACGGGTTTATTCAGTTTCTTCCGGACGCTACCACAGCTGCCTCTACTCATGCTGCTGCTCGGAATTCTGTGTTTCGTGATAGGCGCTCTGCAATGCCAACAGTGCGGCAAGTGCATGTTGAAAAGTGTTGTAGTAGGCACTATAGCCATTTTGTTCAAATTCCGTTTCGCAACGGTGCTACAGTAGGCACTATAGCCACTCTTTCAGTGAGAGAGAAAGGACCATTGTTTCACATGGTGACCGTGACCCCAGTGTTGACCGTCCTGACCCAGAGCATGATGGAGGTTTGTTCAGGGCTGAAAAGGAGCATAAGAGACGTGTGGAGAAGGAAAAGAGCCGCAGAGAAGATAGAGACAGGAGAGAACGAGAACGAAATGATAGAGATTATGAGCATGACAGGGGTCGAGATAGGGAGCGGTTATCCCACAAACGGAA 985 0.4294 MRSDVSYQQLCLNRSIHGLIFNFYWSGQPQMMNGAGQKLTTNDALAYLKAVKDIFQDKRDKYDEFLEVMKDFKGQRIDTVGVIARVKDLFRGHTDLILGFNTFLPKGYEITLPIEDEQPHPKKPVEFNEAMSYVNKIKTRFRGDDRVYKSFLEILNMYRKENKSIDAVYQEVAALFEDHPDLLDGFIQFLPDATTAASTHAAARNSVFRDRRSAMPTVRQVHVEKCCSRHYSHFVQIPFRNGATVGTIATLSVREKGPLFHMVTVTPVLTVLTQSMMEVCSGLKRSIRDVWRRKRAAEKIETGENENEMIEIMSMTGVEIGSGYPTNG 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6954g00001 328 PANTHER SIN3B-RELATED 37 209 IPR039774 GO:0003714
Trme6954g00001 328 SUPERFAMILY PAH2 domain 120 192 IPR036600 GO:0006355
Trme6954g00001 328 Pfam Paired amphipathic helix repeat 147 190 IPR003822 GO:0006355
Trme6954g00001 328 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Trme6954g00001 328 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Trme6954g00001 328 ProSiteProfiles PAH domain profile. 123 193 IPR003822 GO:0006355
Trme6954g00001 328 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Trme6954g00001 328 FunFam Paired amphipathic helix protein Sin3 43 105 - -
Trme6954g00001 328 SUPERFAMILY PAH2 domain 36 106 IPR036600 GO:0006355
Trme6954g00001 328 FunFam Paired amphipathic helix SIN3-like protein 122 193 - -
Trme6954g00001 328 Gene3D Paired amphipathic helix 122 194 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6954g00001 Trme-Chr6954 1 1899 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6954g00001 28 119 WRKY Transcription Factor Family AT4G12020 58.511 2.10e-26 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trme6954g00001 PAH 1.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6954g00001 K11644 - tpra:123906915 394.43