Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6936g00001 ATACAACTACAGCAACTAATGGAAACATTAAGTTCTACAGAACCCCATTACATTAGATGTGTGAAACCAAACAACCTCCTCAAGCCTGCAATTTTCGAGAATGTCAACATTATGCATCAACTTCGTTGTGGTGGTGTGTTGGAGGCTATCAGAATCAGTTGTGCTGGCTACCCTACACGCCGCCCTTTCTTTGAATTTGCCAACAGATTTGGTCTCCTTGCCCCAGAGGCCATGGAAGCAAACTGCAATGAAAAGAATGCTTGCAAAAAGATTCTGGAAAAGATGGGTCTTAAAGGATATCAGATTGGAACAACAAAGGTATTCTTGAGAGCTGGTCAGATAGCTGAACTAGATGCTCGGAGAGCTCAATTACTTAGAAGACTTGCATTCAAACAATATGTGAAATTAATAAAGGAGGCCTCTGCTGTGAAAATTCAAAAGAACATGCGCAGATATGAAGCTAGGAAGGCTTATAAAGAACTTCATATGTCAGTACTTACTTTGCAAACAGCGTTAAGGGCCATTGCTGCTCGCAAGGAGTTCAGATTTGAGAAACAGACCAAAGCTTCCATNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNCTTCCCCAAACAATTGCAGGCTCGGTGGCGGTGCCATAA 687 0.3755 IQLQQLMETLSSTEPHYIRCVKPNNLLKPAIFENVNIMHQLRCGGVLEAIRISCAGYPTRRPFFEFANRFGLLAPEAMEANCNEKNACKKILEKMGLKGYQIGTTKVFLRAGQIAELDARRAQLLRRLAFKQYVKLIKEASAVKIQKNMRRYEARKAYKELHMSVLTLQTALRAIAARKEFRFEKQTKASXXXXXXXXXXXXXXXXXXXXXXXXXXLPQTIAGSVAVP 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6936g00001 228 Pfam IQ calmodulin-binding motif 140 159 IPR000048 GO:0005515
Trme6936g00001 228 Gene3D - 57 120 - -
Trme6936g00001 228 Gene3D - 138 190 - -
Trme6936g00001 228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 186 IPR027417 -
Trme6936g00001 228 ProSiteProfiles IQ motif profile. 161 190 IPR000048 GO:0005515
Trme6936g00001 228 FunFam unconventional myosin-Va 140 188 - -
Trme6936g00001 228 ProSiteProfiles Myosin motor domain profile. 1 122 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme6936g00001 228 Gene3D Kinesin motor domain 14 56 IPR036961 -
Trme6936g00001 228 PANTHER MYOSIN 2 192 - -
Trme6936g00001 228 ProSiteProfiles IQ motif profile. 138 167 IPR000048 GO:0005515
Trme6936g00001 228 Gene3D - 2 13 - -
Trme6936g00001 228 SMART iq_5 160 182 IPR000048 GO:0005515
Trme6936g00001 228 SMART iq_5 137 159 IPR000048 GO:0005515
Trme6936g00001 228 Pfam Myosin head (motor domain) 2 110 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6936g00001 Trme-Chr6936 327 1801 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6936g00001 1 190 Myosins gene family AT1G08730 64.444 3.23e-91 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6936g00001 K10357 - gmx:100816792 283.108