Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6934g00001 GATTGCTACCTTGTATACATTCTCACTGAAATGGCTGGAAGTACATCAATGGTGTTCACTCGGACATGTGATGCAACTCGGCTTCTTGCTTTGATTCTTAGGAATCTCGGTTTGAAAGCCATCCCAATTAATGGTCATATGAATCAGGGGCATGCTGTTGTAGATGGAGTGATTCTCTGGCATCTCACTCCATTATTTGAGTTTGTAGACGTAGTTAGTAGGGGACTGGATATTCCAGAAGTAGATATGGTGATTAACTATGATATTCCCTCAAACTCCAAAGATTATATACATCGTGTGGGAAGGACTGCTCGGGCAGGGCGTTCTGGGGTTGCCATTTCCCTTGTGAACCAATATGAGCTAGAGTGGCACATTCAGATAGAGAAGCTTATAGGCAAGAAGCTACTAGAGTATCCTGCACAAGAACAGGAAGTTTTGCTTTTGGAAAAGCGTGTTAGTGAGGCCAAAAGATTAGCTGTAACGGGGATTTTGTGA 495 0.4303 DCYLVYILTEMAGSTSMVFTRTCDATRLLALILRNLGLKAIPINGHMNQGHAVVDGVILWHLTPLFEFVDVVSRGLDIPEVDMVINYDIPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWHIQIEKLIGKKLLEYPAQEQEVLLLEKRVSEAKRLAVTGIL 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6934g00001 164 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 3 146 IPR001650 -
Trme6934g00001 164 Pfam Helicase conserved C-terminal domain 4 107 IPR001650 -
Trme6934g00001 164 Gene3D - 2 157 IPR027417 -
Trme6934g00001 164 SMART helicmild6 27 107 IPR001650 -
Trme6934g00001 164 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 141 IPR027417 -
Trme6934g00001 164 CDD SF2_C_DEAD 4 116 - -
Trme6934g00001 164 PANTHER RNA HELICASE 2 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6934g00001 Trme-Chr6934 379 1432 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6934g00001 69 139 Eukaryotic Initiation Factors Gene Family AT3G19760 43.662 9.83e-15 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6934g00001 K14777 - gmx:100775796 243.432