Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme69329g00001 ATTGATGAGAATGTTGCTAGGGAAATAATAAACCATAGAAGTCTTCGTCATCCTAATATTATTCGCTTCAAGGAGGTGGTTTTGACTCCTACACATCTTGGTATTGTTATGGAGTATGCTGCTGGTGGAGAGCTCTTTGAGCGAATTTGCAATGCTGGAAGATTCAGTGAAGATGAGGCTCGATATTTCTTCCAGCAGCTTATCTCAGGAGTTAGCTACTGTCACTCCATGGTAAATCTATAA 243 0.4033 IDENVAREIINHRSLRHPNIIRFKEVVLTPTHLGIVMEYAAGGELFERICNAGRFSEDEARYFFQQLISGVSYCHSMVNL 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme69329g00001 80 Gene3D Phosphorylase Kinase; domain 1 1 34 - -
Trme69329g00001 80 Pfam Protein kinase domain 3 77 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme69329g00001 80 SUPERFAMILY Protein kinase-like (PK-like) 3 77 IPR011009 -
Trme69329g00001 80 ProSiteProfiles Protein kinase domain profile. 1 80 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme69329g00001 80 Gene3D Transferase(Phosphotransferase) domain 1 35 80 - -
Trme69329g00001 80 PANTHER SERINE/THREONINE KINASE 5 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme69329g00001 Trme-Chr69329 104 821 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme69329g00001 3 76 CBL-interacting serine-threonine protein kinases AT2G26980 50.000 2.84e-23 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Trme69329g00001 Pkinase 2.7e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme69329g00001 K14498 - ncol:116265216 159.844