Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6929g00001 GCTCAAATTGGACAAGGAGGCTATGGGAAGGTTTATAAAGGTATTCTTTCTAATGGCACTGTGGTAGCCATAAAGCGTGCACAGCAAGGATCACTGCAAGGTGAGAAGGAGTTCCTTACAGAAATATCAATACTATCAAGGCTACATCACCGTAACCTTGTGTCTCTGGTTGGATACTGTGATGAAGAAGGTGAACAGATGCTGGTTTATGAATTTATGTCGAATGGCACACTAAGAGACCACCTTTCTGTTACATCAGAAAAGCCTTTGACTTTTGCTATGAGATTGAAGATAGCATTAGAGTCAGCTAAAGGTCTYRTGTATCTACACACAGAAGCYGAWCCTCCAATATTTCACCGAGATGTTAAGTCAARCAACATATTATTGGACTCTAAGTTCACTGCAAAAGTGGCAGATTTTGGACTTTCACGGCTTGCCCCAGTTCCAGATGTTGAAGGAATTATACCTGGTCATGTATCCACAGTGGTAAAGGGGACTCCGGTAAGACCTGCATGA 516 0.4186 AQIGQGGYGKVYKGILSNGTVVAIKRAQQGSLQGEKEFLTEISILSRLHHRNLVSLVGYCDEEGEQMLVYEFMSNGTLRDHLSVTSEKPLTFAMRLKIALESAKGLXYLHTEAXPPIFHRDVKSXNILLDSKFTAKVADFGLSRLAPVPDVEGIIPGHVSTVVKGTPVRPA 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6929g00001 171 FunFam receptor-like protein kinase FERONIA 1 72 - -
Trme6929g00001 171 Pfam Protein tyrosine and serine/threonine kinase 2 145 IPR001245 GO:0004672|GO:0006468
Trme6929g00001 171 SUPERFAMILY Protein kinase-like (PK-like) 2 167 IPR011009 -
Trme6929g00001 171 Gene3D Transferase(Phosphotransferase) domain 1 74 168 - -
Trme6929g00001 171 SMART serkin_6 1 163 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme6929g00001 171 PANTHER OS01G0750732 PROTEIN 3 167 - -
Trme6929g00001 171 ProSitePatterns Protein kinases ATP-binding region signature. 3 25 IPR017441 GO:0005524
Trme6929g00001 171 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Trme6929g00001 171 ProSiteProfiles Protein kinase domain profile. 1 171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme6929g00001 171 Gene3D Phosphorylase Kinase; domain 1 3 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6929g00001 Trme-Chr6929 2 847 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6929g00001 3 167 Receptor kinase-like Gene Family AT5G01950 72.121 2.92e-82 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Trme6929g00001 PK_Tyr_Ser-Thr 2.4e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6929g00001 - - vvo:131621470 311.612