Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6917g00001 ATGCTTAGTATATCTGTTTTTATTGCTATTGGTGCAGCTATTTCTATTGTTGTTGGTGTTATTGCTATTACTTTTTTGAATATTCATGTTAGGTCTTCAAATTTACATTCTGATTCTCCATTTGGATTACCCGGTGGTAAGGACTATAGATCTTCGCCGGAAAAAGATCCGAAATGTGGAAAAGTTGTGATGTTTAACGGTGATGTTGAATTCACCGATGAGCCGAATAATCTTCTTAAAGAAGGTAATGAAATCGGCCGCGGTGGATTTGGAATTGTTTATTGTGCTGTCCTTCGAGATCAGAAGTCTATTGCAATCAAGAAGCTTATGGGTTCAAGTTTGACAAAGTCACATGATGATTTTGAGAGAGAGGTTCAAAAACTTGGAAAAATTAGGCATCAAAATCTTGTGGCAATTGAAGGGTATTATTGGAATTCAACATTTCAGCTTATTATTTATGAGTACTTTTCTAGAGGGAATTTGCATAAGCTTCTTCATGATGATAATAGCAAAATTGTGTTTTCTTGGAGTGCAAGGTTCAAGGTTATTTTAGGAATTGCAAAAGGGTTGGCCTATTTACACCAAATGAACATAATCCATTATAATATGAAATCTACTAATGTTTTCATTGATTTTTGTGATGAACCAAAAATAGGAGATTTTGGTTTGGTGAATCTATTGCCAATTTTAGACCATTGTGTTTTGAGCAGCAAAATTCAAAGTGCACTTGGATACACGGCTCCTGAATTTGCTTGTCGAACGGTTAACATAACTGAAAAATGCGACGTATATGGTTTTGGAATTTTGGTTCTAGAAATTGTGAGCGGAAAAAGACCCGTGGAATATATGGAGGATGATGTTGTTGTTCTATGTGACATGGTTAGGAGTTCATTGGAGGATGGAAAAGTTGAGCAATGTGTTGATGAGAAACTTGTTGGTAATTTTTTGCTCGAGGAAGCGATTCCTGTGATTAAATTAGGGTTGGTTTGTTCATCTCATGTACCATCAAATCGTCCGAATATGGCTGAGGTTGTTAACATATTAGAGACGATTGAATGCTCTTCGGAAGGACAACAAGAGGAATTACAATGA 1092 0.359 MLSISVFIAIGAAISIVVGVIAITFLNIHVRSSNLHSDSPFGLPGGKDYRSSPEKDPKCGKVVMFNGDVEFTDEPNNLLKEGNEIGRGGFGIVYCAVLRDQKSIAIKKLMGSSLTKSHDDFEREVQKLGKIRHQNLVAIEGYYWNSTFQLIIYEYFSRGNLHKLLHDDNSKIVFSWSARFKVILGIAKGLAYLHQMNIIHYNMKSTNVFIDFCDEPKIGDFGLVNLLPILDHCVLSSKIQSALGYTAPEFACRTVNITEKCDVYGFGILVLEIVSGKRPVEYMEDDVVVLCDMVRSSLEDGKVEQCVDEKLVGNFLLEEAIPVIKLGLVCSSHVPSNRPNMAEVVNILETIECSSEGQQEELQ 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6917g00001 363 Pfam Protein tyrosine and serine/threonine kinase 80 289 IPR001245 GO:0004672|GO:0006468
Trme6917g00001 363 Gene3D Transferase(Phosphotransferase) domain 1 156 363 - -
Trme6917g00001 363 Gene3D Phosphorylase Kinase; domain 1 67 155 - -
Trme6917g00001 363 ProSitePatterns Protein kinases ATP-binding region signature. 85 108 IPR017441 GO:0005524
Trme6917g00001 363 SUPERFAMILY Protein kinase-like (PK-like) 79 350 IPR011009 -
Trme6917g00001 363 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 73 155 - -
Trme6917g00001 363 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 156 357 - -
Trme6917g00001 363 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 76 353 - -
Trme6917g00001 363 ProSiteProfiles Protein kinase domain profile. 79 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6917g00001 Trme-Chr6917 556 1647 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6917g00001 17 362 Receptor kinase-like Gene Family AT3G56370 61.494 7.78e-148 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Trme6917g00001 PK_Tyr_Ser-Thr 1.8e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6917g00001 - - gmx:100813535 527.324