Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6892g00001 GATGCTAGGGTTATATGGGATCACATAATTGGCCGCTCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCATCAGGATGCCCAAAGTGCCATCAACAATATGATCGGTTAG 111 0.4234 DARVIWDHIIGRSKGYGFVSFRDHQDAQSAINNMIG 36
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6892g00001 36 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 1 36 - -
Trme6892g00001 36 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 36 IPR000504 GO:0003723
Trme6892g00001 36 SUPERFAMILY RNA-binding domain, RBD 1 34 IPR035979 GO:0003676
Trme6892g00001 36 Gene3D - 1 36 IPR012677 -
Trme6892g00001 36 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2 34 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6892g00001 Trme-Chr6892 139 488 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6892g00001 9 36 Eukaryotic Initiation Factors Gene Family AT1G71770 53.571 3.49e-06 38.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6892g00001 K13201 - gmx:100777108 69.3218