Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme68871g00001 TCATCAGGGATATGTGGTGTGATGTCATCTAAAGGTGTTTCTTCTACATGTCCTAGTGCTTGTAGTGAACAACTTGAAAGGTCTTCTGAACCGTCTAAGAACAGCAAGAAGAGGGCTAGGCCCGGAGAAAGTTGCAGACCTCGTCCAAGAGACAGGCAATTGATCCAAGATCGAATTAAGGAGCTGAGAGAGCTGGTGCCAAATGGAGCAAAGTGCAGTATTGATTCACTACTAGAGCGTTCGATAAAGCACATGCTTTTTCTGCAAGGCATAGCTAAGCATGCTGACAAGCTAACTAAATTWGCTKATACTAAATCAAAGTTGCATCATATGGAAACAGATATTCTTGGATCCTCTAGTTCAGAGCAGGGTTCAAGTTGGGCAGTGGAGGTAGGGGGACATCTGAAAGTTCATTCAATATTAGTCGAGAATCTTAGCAAGAATGGACAGATGCTTGTTGAGGTATGTTTGAGTATGACTTGA 483 0.4265 SSGICGVMSSKGVSSTCPSACSEQLERSSEPSKNSKKRARPGESCRPRPRDRQLIQDRIKELRELVPNGAKCSIDSLLERSIKHMLFLQGIAKHADKLTKXAXTKSKLHHMETDILGSSSSEQGSSWAVEVGGHLKVHSILVENLSKNGQMLVEVCLSMT 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme68871g00001 160 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 11 155 IPR043561 GO:0003700|GO:0006355
Trme68871g00001 160 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 39 88 IPR011598 GO:0046983
Trme68871g00001 160 MobiDBLite consensus disorder prediction 1 28 - -
Trme68871g00001 160 MobiDBLite consensus disorder prediction 29 56 - -
Trme68871g00001 160 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 52 116 IPR036638 GO:0046983
Trme68871g00001 160 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme68871g00001 Trme-Chr68871 3 674 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme68871g00001 1 155 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 64.516 3.75e-54 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme68871g00001 - - mtr:25499239 259.996