Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme68834g00001 GGTGCTGTGATTGCTGTTAAACAGCTCTCTTCCAAATCAAAGCAAGGAAACCGTGAATTCGTTAATGAAATAGGTATGATATCGGCTTTGCAGCATCCGAATCTTGTGAAGCTTTATGGATGTTGCATTGAAGGAAACCAATTGCTGCTTGTATACGAGTACATGGAGAACAATAGTCTTGCTCGTGCTCTTTTCGGTAAACCAGAACAAAAGTTGAACTTGGACTGGAGCACGAGAATGANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNGAGGAATCAAGGTTGAAAATAGTTCACAGGGATATTAAGGCGACCAATGTCTTACTCGATAAGAATCTGAATGCAAAGATCTCTGATTTCGGATTAGCCAAGCTTGATGAAGAAGAAAATACTCATATCAGCACGCGAATAGCAGGGACAATGTTAGTATTATGCCACCATATTATAAAGTTTTGA 468 0.3611 GAVIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCIEGNQLLLVYEYMENNSLARALFGKPEQKLNLDWSTRMXXXXXXXXXXXXXXEESRLKIVHRDIKATNVLLDKNLNAKISDFGLAKLDEEENTHISTRIAGTMLVLCHHIIKF 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme68834g00001 155 Coils Coil 80 80 - -
Trme68834g00001 155 Gene3D Transferase(Phosphotransferase) domain 1 56 153 - -
Trme68834g00001 155 ProSitePatterns Serine/Threonine protein kinases active-site signature. 101 113 IPR008271 GO:0004672|GO:0006468
Trme68834g00001 155 ProSiteProfiles Protein kinase domain profile. 1 155 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme68834g00001 155 Pfam Protein tyrosine and serine/threonine kinase 4 136 IPR001245 GO:0004672|GO:0006468
Trme68834g00001 155 Gene3D Phosphorylase Kinase; domain 1 1 55 - -
Trme68834g00001 155 SUPERFAMILY Protein kinase-like (PK-like) 2 145 IPR011009 -
Trme68834g00001 155 SMART serkin_6 1 153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme68834g00001 155 FunFam Os07g0541700 protein 55 144 - -
Trme68834g00001 155 Coils Coil 95 100 - -
Trme68834g00001 155 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 146 - -
Trme68834g00001 155 FunFam Os04g0616200 protein 1 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme68834g00001 Trme-Chr68834 60 614 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme68834g00001 1 145 Receptor kinase-like Gene Family AT1G53440 80.000 3.70e-72 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme68834g00001 PK_Tyr_Ser-Thr 6.9e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme68834g00001 - - psat:127094156 247.669