Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme68833g00001 GTGACATACGGTGTTGCCATTCCCTCTGGTCTATTCATTCCAGTCATACTTGCTGGAGCTTCCTATGGGCGTCTAATAGGGACTGTGTTGGATCAATTCACAGTTCTTGATACTGGTTTGTTTGCTCTCCTTGGAGCAGCATCCTTCCTTGGTGGAACAATGAGAATGACAGTTTCTCTCTGTGTCATACTTCTTGAGCTCACGGATAACTTGTTGATGCTACCATTGGTCATGTTGGTTCTCCTCATTTCTAAGACAGTGGCCGATTGTTTTAACAAAGGTGTTTATGATCAGATTGTGGAGTTCAAGGGACTGCCTTATATGGAAGCACATGCAGAGCCGTACATGAGGAATTTAGTTGCAGGCGACGTTGTTTCTGGTCCACTGTTTTCTTTTTGTGGGATCGAGAAAGTGGGGAATATTGTTCATGCTTTGAAGGTGACAAAACATCATGGATTTCCTGTAATTGACGAGCCTCCTTTGACGGATTCTCCTGAGTTGTGTGGGTTGGTATTAAGGTCTCATCTGCTGGTACTTCTCAAGCACAGGACATTGTTCACTAGGGAGAGAGTGGTGACAGGATCTACCATTATGAACAAGGTTAAGGCAAGTGATTTTGCGAAACCGGGTTTGGGGAGAGGGATAATAAGGGTGGAGGATTTAGACATTTCACAAGAGGATATGGAAATGTTTGTTGATCTTCATCCAATCACTAATACATCTCCATATACTGTTGTTGAAACAATGTCTCTTGCAAAAGCTGCTCTTCTTTTCCGGGAGCTTGGACTCAGGCACTTGCTCGTCGTGCCCAAGAAACCAGGAGTAAGTC 829 0.4415 VTYGVAIPSGLFIPVILAGASYGRLIGTVLDQFTVLDTGLFALLGAASFLGGTMRMTVSLCVILLELTDNLLMLPLVMLVLLISKTVADCFNKGVYDQIVEFKGLPYMEAHAEPYMRNLVAGDVVSGPLFSFCGIEKVGNIVHALKVTKHHGFPVIDEPPLTDSPELCGLVLRSHLLVLLKHRTLFTRERVVTGSTIMNKVKASDFAKPGLGRGIIRVEDLDISQEDMEMFVDLHPITNTSPYTVVETMSLAKAALLFRELGLRHLLVVPKKPGVS 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme68833g00001 276 CDD CBS_pair_voltage-gated_CLC_euk_bac 121 271 - -
Trme68833g00001 276 PRINTS Chloride channel signature 7 27 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trme68833g00001 276 PRINTS Chloride channel signature 57 76 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trme68833g00001 276 PRINTS Chloride channel signature 39 55 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trme68833g00001 276 PRINTS Chloride channel signature 95 109 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trme68833g00001 276 Gene3D Clc chloride channel 1 109 - -
Trme68833g00001 276 SUPERFAMILY CBS-domain pair 112 271 IPR046342 -
Trme68833g00001 276 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 1 273 - -
Trme68833g00001 276 SUPERFAMILY Clc chloride channel 1 110 IPR014743 -
Trme68833g00001 276 Pfam Voltage gated chloride channel 1 89 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trme68833g00001 276 Gene3D - 121 271 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme68833g00001 Trme-Chr68833 3 831 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme68833g00001 1 274 Ion Channels AT5G49890 74.818 1.98e-133 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme68833g00001 K05016 - mnt:21394244 395.971