Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6882g00001 GGATTGATGTCGAGGAACATCCCTACAACTTTTCGACGTGACCATGTTCAAAGAGATGATTCATCATTGAATGGAGACCTTCCTATTATCCCTTTAATTGTGATTCAACAAAGCACTAATTACTTTTCATTGTCTTCTAAATTAGGAGAAGGAGGATTTGGTTCTGTTTACAAGGGTACTTTACCGGATGGGACAGAAATTGCGGCCAAAAGGCTTTCAGAAACGTCCGGTCAAGGTTTAGAGGAGTTCAAGAATGAAGTGATTTTCATAGCTAAACTGCAACATCGAAACCTTGTGAAACTCTTGGGTTGTTGCTTCGAAGAAAATGAAAAGATACTAGTGTATGAGTACATGCCAAATTCAGGACTCGACTTTCACCTTTTCAATTTGGAAAATCATAATCAACTAGATTGGAATAAACGTCTAAACATTATAAACGGAATCGCAAGAGGACTGTTATACCTTCACGAGGATTCTCGACTTAGAGTTATCCATAGAGATTTGAAAGCCAGCAATGTTCTTTTGGACGATGAAATGAATCCAAAGATATCAGATTTCGGATTGGCAAGAAGGTTCGAAAAAGGCCAAAGTCAGACAGAAACAAAAAGAGTTATGGGAACTTACGGTTACATGGCTCCAGAATATGCTATGGCTGGATTGTTTTCGGTAAAATCTGATGTTTTCAGCTTTGGAGTGCTCGTATTGGAAATCGTTTATGGTAAAAGGAATGGTGAATTCTTCTTTTCGGAACATGGGCAAAGTCTTCTCTTATATATTTGGAAACTCTGGTATGACGGAAAAAGTTGGGAATTTGTTGATCCGATCCAAAGAAAAACATACATCGAACGTGAAGTTTTAAAGTGCGTACACATTGGTTTATTGTGCGTGCAAGAAGATGCTGCAGATCGACCAACTATGTCCACTGTTGTTCTCATGCTAGGGAGCGACACGATGGTCCTTCCAAAACCTGAAAGACCAGCATTTTCTGTCGGAAGACTGCCCAATGAAGATTCAACTTCAAAAAGTTATAATGATAACTCGATTAACGAACTTACGGTAACTAGTTTTACACCTAGATAG 1080 0.388 GLMSRNIPTTFRRDHVQRDDSSLNGDLPIIPLIVIQQSTNYFSLSSKLGEGGFGSVYKGTLPDGTEIAAKRLSETSGQGLEEFKNEVIFIAKLQHRNLVKLLGCCFEENEKILVYEYMPNSGLDFHLFNLENHNQLDWNKRLNIINGIARGLLYLHEDSRLRVIHRDLKASNVLLDDEMNPKISDFGLARRFEKGQSQTETKRVMGTYGYMAPEYAMAGLFSVKSDVFSFGVLVLEIVYGKRNGEFFFSEHGQSLLLYIWKLWYDGKSWEFVDPIQRKTYIEREVLKCVHIGLLCVQEDAADRPTMSTVVLMLGSDTMVLPKPERPAFSVGRLPNEDSTSKSYNDNSINELTVTSFTPR 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6882g00001 359 CDD STKc_IRAK 48 313 - -
Trme6882g00001 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Trme6882g00001 359 Gene3D Phosphorylase Kinase; domain 1 6 117 - -
Trme6882g00001 359 SMART serkin_6 42 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme6882g00001 359 Pfam Domain of unknown function (DUF3403) 315 359 IPR021820 GO:0004674
Trme6882g00001 359 SUPERFAMILY Protein kinase-like (PK-like) 26 340 IPR011009 -
Trme6882g00001 359 FunFam cysteine-rich receptor-like protein kinase 10 118 320 - -
Trme6882g00001 359 ProSitePatterns Protein kinases ATP-binding region signature. 48 70 IPR017441 GO:0005524
Trme6882g00001 359 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 8 117 - -
Trme6882g00001 359 MobiDBLite consensus disorder prediction 325 345 - -
Trme6882g00001 359 Gene3D Transferase(Phosphotransferase) domain 1 118 319 - -
Trme6882g00001 359 Pfam Protein tyrosine and serine/threonine kinase 43 311 IPR001245 GO:0004672|GO:0006468
Trme6882g00001 359 ProSiteProfiles Protein kinase domain profile. 42 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme6882g00001 359 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 17 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6882g00001 Trme-Chr6882 152 1725 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6882g00001 34 330 Receptor kinase-like Gene Family AT4G23230 58.586 1.34e-128 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme6882g00001 PK_Tyr_Ser-Thr 9.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6882g00001 - - tpra:123894542 682.174