Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme68812g00001 ATGAGCAACCAAAACAACATGGTCACAGCCCAAGGTCGACTAGATCCAAACCAGAACACCGCAACTTCAATTCAACAATGTGACATAATACCAAGCTCGGACCTCAAACCTGTGGTAGGCTCTGTCAAAACATACCTAGGCCGCCCATGGAAGAAATACTCCAGGACTGTTGTGCTGCAGTCTGTCGTGGATAGCCACATTGACCCCGCAGGATGGGCTGAATGGGATGCTGCTAGTAAAGACTTTCTGCAAACATTGTATTACGGAGAGTACATGAACAGCGGAGCAGGTGCTGGTACCGGCAAGAGAGTGACTTGGCCTGGTTATCATATCATCAAAACTGCTGCAGAGGCTAGCAAGTTTACAGTAGCACAACTCATCCAAGGTAATGTTTGGTTGAAGAACACAGGAGTAGCTTTCATTGAAGGCTTGTAG 435 0.4736 MSNQNNMVTAQGRLDPNQNTATSIQQCDIIPSSDLKPVVGSVKTYLGRPWKKYSRTVVLQSVVDSHIDPAGWAEWDAASKDFLQTLYYGEYMNSGAGAGTGKRVTWPGYHIIKTAAEASKFTVAQLIQGNVWLKNTGVAFIEGL 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme68812g00001 144 Gene3D - 1 144 IPR012334 -
Trme68812g00001 144 PANTHER PECTINESTERASE 1 134 - -
Trme68812g00001 144 Pfam Pectinesterase 1 130 IPR000070 GO:0030599|GO:0042545
Trme68812g00001 144 SUPERFAMILY Pectin lyase-like 2 143 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme68812g00001 Trme-Chr68812 355 789 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme68812g00001 4 144 Carbohydrate Esterase AT1G11580 65.493 8.06e-60 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme68812g00001 K01051 - gmx:100815836 266.929